An integrated analytical methodology has been developed for determining nitrogen‐containing polycyclic aromatic hydrocarbons, which enables quantitation of individual contaminants as low as 1 μg/kg in sediment samples. A cross‐sectional profile from the Hamilton Harbour sediment samples was analyzed for azaarenes. These contaminants were separated by Soxhlet extraction, and pH adjustment allowed their isolation from different classes of neutral and acidic components. Separation and identification of the organic bases in each sample were achieved by using open tubular column gas chromatography with thermionic detection and HRGC‐mass spectrometry. Organic bases present in the samples included mostly azaarenes such as acridines, benzacridines, azafluorene, benzoquinolines, azapyrenes, etc. Quantitation and environmental significance of these compounds are discussed. Recoveries of individual azaarenes at two different levels were evaluated. Data presented indicate that detection limits of this method are between 1 and 10 μg/kg. Recovery azaarenes from bottom sediment samples at concentration levels between 1 to 100 μg/kg is 81 ± 17%.