Reducing radiation dose to patients without compromising imaging quality has been an important issue in the medical use of X-ray computed tomography (CT). In this study, based on the conceptual designs of different types of attenuation filters, the radiation doses to patients who undergo a typical head, thorax and abdomen scan using a cone-beam CT with different scanning protocols were simulated using the Monte Carlo method, and the isotropy of the noise power spectrum (NPS) of the reconstructed images was also calculated. Compared to the scanning protocol without attenuation and tube current modulation (TCM), the results showed that the fluid dynamic bowtie filter (FDB) combined with the TCM technique reduced the average organ dose by 70%, 34% and 60% for a typical head, thorax and abdomen scan, respectively, and the NPS isotropy of the reconstructed images was also significantly improved. Compared to most currently used static bowtie filters, the FDB has a higher potential to reduce the dose for patients undergoing CT scans. Further efforts are warranted to make the FDB technique clinically useful.