Static analysis frameworks, such as Soot and Wala, are used by researchers to prototype and compare program analyses. These frameworks vary on heap abstraction, modeling library classes, and underlying intermediate program representation (IR). Often, these variations pose a threat to the validity of the results as the implications of comparing the same analysis implementation in different frameworks are still unexplored. Earlier studies have focused on the precision, soundness, and recall of the algorithms implemented in these frameworks; however, little to no work has been done to evaluate the effects of program representation. In this work, we fill this gap and study the impact of program representation on pointer analysis. Unfortunately, existing metrics are insufficient for such a comparison due to their inability to isolate each aspect of the program representation. Therefore, we define two novel metrics that measure these analyses’ precision after isolating the influence of class-hierarchy and intermediate representation. Our results establish that the minor differences in the class hierarchy and IR do not impact program analysis significantly. Besides, they reveal the sources of unsoundness that aid researchers in developing program analysis.