Effects of cations and pH value on ribosome-catalyzed peptidyl transfer were studied, using as assays the reaction of puromycin with (a) washed, polyphenylalanine-charged Escherichia coli ribosomes and (b) terminal fragments from formlyl-methionyl-tRNA (CAACCA-Met-F and CCA-Met-F) in the presence of purified 50 S ribosomal subunits. I n both systems the reaction required the presence of suitable divalent and monovalent cations, and was progressively inhibited below pH 8.5.I n the polyphenylalanine system Mg2+ was active over the range 0.3 mM to 1 M, with a broad optimum from approximately 3 to 100 mM. Mg2+ was replaceable by Ca2+ or Mn2+. Other divalent metal ions were inert or inhibitory. Spermidine was also inert. Monovalent cations were active in the order, NH,+ > K+ = Rb+ > Cs+. NH,+ and K+ were progressively more effective from 10 mM to a t least 1 M. Na+ and Li+ were inert.The reaction of formyl-methionyl oligonucleotides with puromycin showed similar responses to the polyphenylalanine system except that (a) Mg2+ was active over the range 5 mM to 1 M with an optimum a t approximately 100 mM, (b) Ca2+ was inert, (c) K+ was inactive below 100 mM, and (d) NH,+ was only weakly active.The bearing of the results on the mechanism of ribosome-catalyzed peptidyl transfer is discussed, and a possible application of the results is noted.A considerable body of evidence now indicates that peptide bond formation in protein synthesis is catalysed by the 50 S ribosomal subunit ([l] and references therein). Moreover the reaction possesses properties of a simple group transfer reaction, and has been named peptidyl transfer [l]. As an approach toward furthering our understanding of the reaction mechanism and as part of a more general study of the reaction, we have examined in some detail the effects of cations and pH value on ribosome-catalyzed peptidyl transfer.Two assay systems have been employed in the present study, the reaction of puromycin with washed, polyphenylalanine-charged E. coli ribosomes [ l ] and the 50 S ribosome-catalyzed reaction of puromycin with formyl-methionyl-oligonucleotide fragments (CAACCA-Met-P and CCA-Met-F) from formyl-methionyl-tRNA [2 -41. The polyphenylalanine system has the advantage that polyphenylalanyl-tRNA, once synthesized, remains firmly bound to the (50 S) ribosome under a wide variety of ionic conditions, including exposure to low Mg2+ concentration and to absence of monovalent cations [5]. The ionic characteristics of peptidyl transfer can therefore be distinguished from those of the other Unusual Abbreviations. F-met (or met-I?), N-formylmethionyl; mRNA, messenger RNA; tRNA, transfer RNA ; BBOT, 2 : 5 bis [5-tertiary-butyl-benzoxazolyl-2-]thiophen (purchased from CIBA).
21.steps of protein synthesis, such as binding of mRNA and tRNA, and interaction between 50 S and 30 S subunits. I n the reaction of F-met-oligonucleotides with puromycin the oligonucleotides are not in the form of a pre-existing complex with the 50s ribosome, but the reaction is more resolved than that in the polyph...