The Simple Ocean Data Assimilation, version 2.2.4 (SODA 2.2.4), analysis for the period of 1960-2010 is used to study the variability of Pacific subtropical cells (STCs) and its causal relation with tropical climate variability. Results show that the interior STC transport into the equatorial basin through 98S and 98N is well connected with equatorial sea surface temperature (SST) (98S-98N, 1808-908W). The highest correlation at interannual time scales is contributed by the western interior STC transport within 1608E and 1308W. It is known that the ENSO recharge-discharge cycle experiences five stages: the recharging stage, recharged stage, warmest SST stage, discharging stage, and discharged stage. A correlation analysis of interior STC transport convergence, equatorial warm water volume (WWV), wind stress curl, and SST identifies the time intervals between the five stages, which are 8, 10, 2, and 8 months, respectively. A composite analysis for El Niñodeveloping and La Niña-developing events is also performed. The composited ENSO evolutions are in accordance with the recharge-discharge theory and the corresponding time lags between the above denoted five stages are 4-12, 6, 2, and 4 months, respectively. For stronger El Niño events, the discharge due to interior STC transport at 98N terminates earlier than that at 98S because of the southward migration of westerly winds following the El Niño peak phase. This study clarifies subsurface transport processes and their time intervals, which are useful for refinement of theoretical models and for evaluating coupled ocean-atmosphere general circulation model results.