Precambrian iron oxide copper-gold (IOCG) systems have commonly experienced multiple mineralising and tectonothermal events and identifying their timing and geodynamic framework is challenging. World-class IOCG deposits in the Olympic Cu-Au Province, South Australia, are dominated by hematite and formed in the upper crust, while the magnetite-dominated Cu deposits hosted in granulite facies rocks are considered to represent the deeper expression of giant IOCG system. However, the application of novel in-situ Lu-Hf apatite geochronology reveals the magnetite-hosted Cu mineralisation is significantly younger and unrelated to the well-known ~ 1590 Ma Gawler Craton IOCG systems. Apatite Lu-Hf ages from the granulite that predates Cu mineralisation give ages of 1490 Ma. Infiltration of Cu-bearing fluids resulted in recrystallisation of apatite, LREE mobilisation and formation of secondary monazite. Lu-Hf ages for syn-mineralisation apatite give 1460 Ma, consistent with c. 1460 Ma U-Pb ages from secondary monazite. In contrast to the apatite in situ Lu-Hf ages, all apatite types produce a single U-Pb age of c. 1460 Ma, demonstrating the ability of Lu-Hf to preserve a more complete history of apatite formation than U-Pb in high- to medium-temperature rock systems. The timing of mineralisation coincides with the onset of Nuna fragmentation, representing a previously unrecognised driver for mineral system formation in southern Australia that installed Cu in crust previously dehydrated during a long history of granulite-grade tectonic events. The recognition of this Cu system in rocks generally considered unprospective shows that continental breakup can rejuvenate metallic systems in otherwise unprospective crust.