The EBNA1 protein of Epstein-Barr virus (EBV) is essential for EBV latent infection in ensuring the replication and stable segregation of the EBV genomes and in activating the transcription of other EBV latency genes. We have tested the ability of four host proteins (Brd2, Brd4, DEK, and MeCP2) implicated in the segregation of papillomavirus and Kaposi's sarcoma-associated herpesvirus to support EBNA1-mediated segregation of EBV-based plasmids in Saccharomyces cerevisiae. We found that Brd4 enabled EBNA1-mediated segregation while Brd2 and MeCP2 had a general stimulatory effect on plasmid maintenance. EBNA1 interacted with Brd4 in both yeast and human cells through N-terminal sequences previously shown to mediate transcriptional activation but not segregation. In keeping with this interaction site, silencing of Brd4 in human cells decreased transcriptional activation by EBNA1 but not the mitotic chromosome attachment of EBNA1 that is required for segregation. In addition, Brd4 was found to be preferentially localized to the FR enhancer element regulated by EBNA1, over other EBV sequences, in latently EBV-infected cells. The results indicate that EBNA1 can functionally interact with Brd4 in native and heterologous systems and that this interaction facilitates transcriptional activation by EBNA1 from the FR element.As part of their life cycle, gammaherpesviruses and papillomaviruses establish persistent infections in proliferating cells in which their double-stranded circular DNA genomes are maintained at a constant copy number. Maintenance of copy number involves the doubling of the population of viral genomes each cell cycle and a segregation mechanism to ensure equal delivery of the genomes to the daughter cells during cell division. The mechanism of mitotic segregation is conserved in the gammaherpesviruses and papillomaviruses in that, in all cases, the viral genomes are tethered to the host mitotic chromosomes through the viral origin DNA binding protein, which binds directly to the viral segregation element and interacts with one or more host chromosomal proteins.The mechanism of papillomavirus genome segregation has been studied most extensively using the bovine papillomavirus (BPV). The BPV E2 protein tethers the viral genomes to host chromosomes through interactions with multiple E2 recognition sites in the minichromosome maintenance element (MME) (22,30,38,47). E2 binds the MME through its DNA binding and dimerization domain and interacts with mitotic chromosomes through the domain responsible for transcriptional activation (6, 47). The mechanism by which the E2 transactivation domain contacts mitotic chromosomes to mediate segregation has been the subject of several studies, and considerable evidence has implicated an interaction with the bromodomain protein Brd4 in this process. Brd4 was identified as a binding partner of E2 that colocalized with E2 on host mitotic chromosomes and was shown to enable E2 to maintain plasmids containing the MME in budding yeast (Saccharomyces cerevisiae) (9,34,62). Inte...