Long-term allograft survival generally requires lifelong immunosuppression (IS). Rarely, recipients display spontaneous ''operational tolerance'' with stable graft function in the absence of IS. The lack of biological markers of this phenomenon precludes identification of potentially tolerant patients in which IS could be tapered and hinders the development of new tolerance-inducing strategies. The objective of this study was to identify minimally invasive blood biomarkers for operational tolerance and use these biomarkers to determine the frequency of this state in immunosuppressed patients with stable graft function. Blood gene expression profiles from 75 renal-transplant patient cohorts (operational tolerance/acute and chronic rejection/stable graft function on IS) and 16 healthy individuals were analyzed. A subset of samples was used for microarray analysis where three-class comparison of the different groups of patients identified a ''tolerant footprint'' of 49 genes. These biomarkers were applied for prediction of operational tolerance by microarray and real-time PCR in independent test groups. Thirty-three of 49 genes correctly segregated tolerance and chronic rejection phenotypes with 99% and 86% specificity. The signature is shared with 1 of 12 and 5 of 10 stable patients on triple IS and low-dose steroid monotherapy, respectively. The gene signature suggests a pattern of reduced costimulatory signaling, immune quiescence, apoptosis, and memory T cell responses. This study identifies in the blood of kidney recipients a set of genes associated with operational tolerance that may have utility as a minimally invasive monitoring tool for guiding IS titration. Further validation of this tool for safe IS minimization in prospective clinical trials is warranted.kidney transplantation ͉ microarray ͉ tolerant ͉ genomics ͉ immunosuppression titration D espite continuous improvement in renal allograft survival over the last decade, the half-life of renal allografts has increased marginally because of accrual of chronic graft nephropathy from drug-related nephrotoxicity and chronic rejection (1, 2). Patients facing life-long immunosuppression (IS) have increased risk of infection and malignancy (3), whereas insufficient immunosuppressive drug exposure or interruption usually increases rejection risk (4). However, spontaneous and long-term graft acceptance is observed in a small number of patients after solid-organ transplantation (5, 6), years after total withdrawal of immunosuppressive drugs, confirming that a clinical operational state of tolerance to a mismatched graft, described as ''a state of quiescence of the transplanted organ, functioning without a destructive immune response'' (7), can indeed occur and exist in humans. However, the frequency of this observation in the kidney transplant population is unknown and, currently, we cannot identify patients primed to develop this immune adaptation or monitor for the stability of this status of ''operational tolerance.'' The operationally tolerant kidney transpla...