We propose a one-dimensional conjugated photonic crystal single heterojunction infiltrated with a single graphene layer to achieve large Faraday rotation (FR) angles as well as high transmission simultaneously. The effects of the external magnetic field values, incidence angle, number of unit cells, layer thickness of constituents of the conjugated photonic crystals, chemical potential of graphene, and ambient temperature on the Faraday rotation angle and transmission are investigated. Our results reveal that both the sign reversal and shifting of the FR peak can be obtained by changing the width of layers in the conjugated photonic crystal. In the case of negative FR angle, an increase of magnetic field enhances the FR angle and degrades the transmission. However, in the case of positive FR angle, when the magnetic field increases to a certain value, the FR angle is improved too. Further increase of the magnetic field leads to a decrease of FR angle. With increasing the number of unit cells, the FR angle is enhanced at the cost of decreasing the transmission. It is shown that normal incidence results in higher FR angle and transmission. It is also demonstrated that sign reversal and change of the FR angle is possible by manipulating the chemical potential of graphene and the ambient temperature.