The fundamental role of conservation science is to provide land managers and policy-makers with evidence-based practical guidance. Conservation decisions are usually made with limited information and tight budgets. This dictates the need for efficiency and cost-effective actions. Basically, efficiency is the ratio between benefit and cost. The larger the ratio (compared to other systems) the higher the efficiency of that system. When calculating efficiency, benefits and costs are usually in the same currency. In this thesis, cost-effectiveness is the ratio of a non-economic benefit relative to an economic or semi-economic (e.g. area of land) cost. Using decision science and defining objectives (such as achieving certain conservation targets) of the conservation problem we are addressing, can help us find better actions. Once the objectives of the problem are established, decision makers need to decide what features of biodiversity-genes, species, habitat-we intend to benefit. Different conservation problems involve different kinds of biodiversity features, which can represent different levels of coarseness (e.g. single species versus multiple; species versus ecosystems, etc.); each will have different financial costs and biodiversity benefits. However, the cost-effectiveness of choosing conservation features at different levels of coarseness is not well studied. As such, the overarching questions of my thesis are: How does the cost-effectiveness of the conservation outcomes change with the use of different fine-and coarse-scale biodiversity features as target? What are the trade-offs between biodiversity benefit and conservation cost involved when applying fine-and coarse-scale conservation efforts? To examine these questions, I investigated the cost-effectiveness of conservation planning for two major conservation problems: 1) mitigating the effects of roads on wildlife (Chapters 2-3); and 2) the planning of protected area networks (Chapters 4-5). I explored the cost-effectiveness of several aspects of planning at different scales: single species (Chapter 2); from single to multiple species (Chapter 3) and from multispecies to a set of focal species (Chapter 3); and planning at both the multispecies and multi-ecosystem levels (Chapters 4-5). The negative impact of roads on wildlife is a major problem worldwide. The two main direct effects are mortality due to animal-vehicle collision and reduced connectivity due to fragmentation. Mitigation measures such as fences and wildlife passages can be used to II reduce these effects, however they are expensive. The limitation of available conservation funds indicates the need for cost-effective solutions using decision science to decide which mitigation measures to use and where to place them. As such, I first mathematically formulated the problem of which road mitigation measures to place where, for the conservation of the threatened koala (Phascolarctos cinereus) population in the Koala Coast of southeast Queensland (Chapter 2). Each budget step had an optimal mitigat...