This study is aimed in order to study the data protection software of civil aviation management flight information system based on FPE algorithm. The author established the data warehouse software of the air traffic control production information statistics system. First, using the Jquery browser application framework + service-oriented Web Service architecture technology, a B/S/S multilayer data application based entirely on browser applications is established. Then, with the support of the ATC production information statistical data warehouse software and the system application framework, the system realizes a series of production data processing related to production information management, such as data collection, data editing, data review, and business data statistics. Finally, combined with the attributes of business data, we analyze and compare all kinds of production information from multiple dimensions such as time and region; it also provides users with data analysis results of curve, pie, column, and other performance situations, display mode, and report output tool. SQL statement can be implemented to add data to the database, modify the existing data in the database, delete the existing data in the database, and can be queried in a variety of ways to the data in the database, and VB provides a human-computer interaction interface for various operations.