The gene (cpo) encoding the extracellular protease CPI produced by the moderately halophilic bacterium Pseudoalteromonas ruthenica CP76 was cloned, and its nucleotide sequence was analyzed. The cpo gene encodes a 733-residue protein showing sequence similarity to metalloproteases of the M4 family. The type II secretion apparatus was shown to be responsible for secretion of the haloprotease CPI.Moderately halophilic microorganisms include a broad variety of bacteria that are able to grow in media containing a wide range of elevated NaCl concentrations (3 to 15% NaCl) (56). Considerable attention has been focused on enzymes of moderately halophilic bacteria, since they have substantial biotechnological potential (29,56). While several proteases from extreme halophiles, members of the halophilic archaea, have been characterized (12,15,19,36,44,49,50,51,57), fewer proteases from moderately halophilic bacteria have been purified and studied in depth (9,14,18,20,21,33).The moderately halophilic bacterium Pseudoalteromonas ruthenica CP76 was isolated from a saltern located in Isla Cristina (Huelva, Spain). This strain was selected for its ability to produce an extracellular protease, haloprotease CPI, which has a molecular mass of 38.0 kDa (46, 47). The haloprotease CPI was purified and biochemically characterized. It showed optimal activity at 55°C and pH 8.5 and tolerated a wide range of NaCl concentrations (0 to 4 M NaCl). In this work, we describe the molecular characterization of the operon encoding the haloprotease CPI and a second protease, CPII. We also report the first study of the mechanism used for the secretion of haloprotease CPI to the extracellular medium.The N-terminal amino acid sequence of the haloprotease CPI (ADATGPGGNQKTGQYNY) (47) allowed us to identify several homologues of CPI in a BLAST search (1). We aligned (16, 53) metalloproteases from Vibrio, Aeromonas, or Pseudomonas species (3,6,23,30). On the basis of the conserved regions, degenerate PCR primers AminoProL (GGYC CWGGYGGYAAYCAAAAR) and ProR (CCNGNATRTC HGARAANGCTTC) were designed. We first amplified a 500-bp DNA fragment from the total DNA (27) of P. ruthenica CP76, which was then used in two rounds of inverse PCR (37) to obtain a 4,680-bp fragment. Two open reading frames (ORFs) were found in this fragment (Fig. 1A). The first of them, cpo (2,202 bp), starts at position 148 and ends at position 2,349, encoding a polypeptide of 733 amino acids with an estimated molecular mass of 78.8 kDa. The mature secreted CPI protease corresponded to residues Ala-212 to Lys-542 of the cpo gene product, on the basis of its N-terminal sequence and molecular mass (38.0 kDa) (47). A BLAST analysis of the protein sequence deduced from cpo against the NCBI CDD database (26) revealed that the gene encodes a modular enzyme consisting of four domains: the signal sequence (28 amino acids); the N-terminal proregion (183 amino acids); the mature protease region (331 amino acids) of the M4 superfamily, with two distinct N-terminal and C-terminal domains; and the C...