Hydrometeorological data sets are usually incomplete due to different reasons (malfunctioning sensors, collected data storage problems, etc.). Missing data do not only affect the resulting decision-making process, but also the choice of a particular analysis method. Given the increase of extreme events due to climate change, it is necessary to improve the management of water resources. Due to the solution of this problem requires the development of accurate estimations and its application in real time, this work present two contributions. Firstly, different gap-filling techniques have been evaluated in order to select the most adequate one for river stage series: (i) cubic splines (CS), (ii) radial basis function (RBF) and (iii) multilayer perceptron (MLP) suitable for small processors like Arduino or Raspberry Pi. The results obtained confirmed that splines and monolayer perceptrons had the best performances. Secondly, a pre-validating Internet of Things (IoT) device was developed using a dynamic seed non-linear autoregressive neural network (NARNN). This automatic pre-validation in real time was tested satisfactorily, sending the data to the catchment basin process center (CPC) by using remote communication based on 4G technology.