Visual inputs from the 2 eyes in most primates activate alternating bands of cortex in layer 4C of primary visual cortex, thereby forming the well-studied ocular dominance columns (ODCs). In addition, the enzymatic reactivity of cytochrome oxidase (CO) reveals ''blob'' structures within the supragranular layers of ODCs. Here, we present evidence for compartments within ODCs that have not been clearly defined previously. These compartments are revealed by the activity-dependent mRNA expression of immediate-early genes (IEGs), zif268 and c-fos, after brief periods of monocular inactivation (MI). After a 1-3-h period of MI produced by an injection of tetrodotoxin, IEGs were expressed in a patchy pattern that included infragranular layers, as well as supragranular layers, where they corresponded to the CO blobs. In addition, the expressions of IEGs in layer 4C were especially high in narrow zones along boundaries of ODCs, referred to here as the ''border strips'' of the ODCs. After longer periods of MI (>5 h), the border strips were no longer apparent. When either eyelid was sutured, changes in IEG expression were not evident in layer 4C; however, the patchy pattern of the expression in the infragranular and supragranular layers remained. These changes of IEG expression after MI indicate that cortical circuits involving the CO blobs of the supragranular layers include aligned groups of neurons in the infragranular layers and that the border strip neurons of layer 4C are highly active for a 3-h period after MI.CO patch/puff ͉ in situ hybridization ͉ macaque monkey ͉ monocular deprivation S everal important features of the anatomical and physiological organization of primary visual (striate) cortex (V1) of macaque monkeys have been known since the early studies of Hubel and Wiesel (1, 2). Visual afferents from the 2 eyes have segregated inputs into V1, forming periodical ''ocular dominance columns'' (ODCs) perpendicular to the pial surface. Geniculocortical afferents related to each eye terminate separately in ODCs within layer 4C, which, in turn, project in a less restricted manner into ODCs of supragranular layers. Enzymatic reactivity of cytochrome oxidase (CO) in the mitochondria reflects chronic neuronal activity, and its pattern in the supragranular layers is patchy, revealing the so-called ''CO puffs'' or ''blobs'' (3). The oval blobs are located in the centers of ODCs, and they have distinct patterns of connectivity and neuron response properties associated with the color processing streams of the koniocellular and parvocellular pathways (4).Long-term (24 h or more) inactivation of 1 eye by enucleation, tetrodotoxin (TTX) injection, or deprivation by eyelid suture significantly reduces neuronal activity in the ODCs that mainly receive projections from the inactivated eye, and CO activity is decreased in the deprived columns to demarcate the shape of ODCs (5). The expression of immediate-early genes (IEGs), such as Zif268 and c-Fos, is also strongly dependent on neuronal activity, and histochemical staining for...