The increased availability and brilliance of new X-ray facilities have in the recent years opened up the possibility to characterize the alignment of dispersed anisotropic nanoparticles in various microuidic applications, from hydrodynamic self assemblies to ows in complex geometries. In such applications, it is vital to study the alignment of the nanoparticles in the ow, as this in turn aects the nal properties of the self-assembled superstructures or those of the ow itself. Small angle X-ray scattering (SAXS) is a well-suited characterization technique for this, but typically provides the alignment in a projected plane perpendicular to the beam direction. In this work, we demonstrate a simple method to reconstruct the full three-dimensional (3D) orientation distribution function (ODF) from a SAXS-experiment through the assumption that the azimuthal angle of the nanoparticles around the ow direction is distributed uniformly; an assumption that is valid for a large range of nanoparticle ow processes.For demonstration purposes, the experimental results from previous works on hydrodynamic self-assembly of cellulose nanobrils (CNF) into laments have been revised, resulting in a small correction to the presented order parameters. The results are then directly compared with simple numerical models to describe the increased alignment of CNF both in the owing system and during the drying of the lament. The proposed reconstruction method will allow for further improvements of theoretical or numerical simulations and consequently open up new possibilities for optimizing assembly processes, which include ow-alignment of elongated nanoparticles.