Impact of acid mine drainage (AMD) from a coal mine waste rock pile deposited within a permafrost-affected Arctic ecosystem was investigated near Longyearbyen (Svalbard, 78°N). Analyses included metal concentrations (Al, Fe, Mn, Zn, Ni, Cr, As and Pb) in runoff, soil and plants. It was observed that impacts of AMD, such as plant degradation, were similar to impacts reported from non-arctic ecosystems. It was found that bio-available metal concentrations in soil samples were not useful in assessing potential plant toxicity, as metals were not accumulated in the most impacted area due to low soil pH (pH<4). Native graminoid plants in the high impacted area showed accumulation of all the investigated elements. Al, Mn and As were found at phyto-toxic concentrations. Metal uptake in two native graminoid plants was studied in the laboratory. Positive correlations were noted between metal concentrations and plant uptake for all metals investigated, except Fe. High Fe concentrations found in plant samples in the impacted area are considered a result of Fe-oxide precipitation (plaque) on leaves during the spring flush when runoff covers the plants. We conclude that the weathering products Al, Mn and Fe induce the largest negative impact on vegetation in the area, and that a major fraction of the annual uptake of metals occurs during spring flushes. During these flushes, metals produced from weathering processes throughout the winter are released in high concentrations, coinciding with low pH values, low infiltration rates due to permafrost and the start of the plant growth season.