“…Nuclear sequence data, including from the Y chromosome, have often been used for studies involving multiple subspecies or species (Boissinot & Boursot, ; Geraldes et al ., ) but not generally extended to within‐subspecies phylogeographical history, often as a result of insufficient polymorphism. Where more recent phylogeographical studies have used additional non‐mtDNA markers, these have tended to be autosomal microsatellites that have been useful to examine population‐level genetic parameters of the study populations but, so far, they are of less value for inferring colonization history (Hardouin et al ., ; Jones et al ., , b, ; Förster et al ., ; Gabriel, Mathias & Searle, ). There is further potential for nuclear studies from large‐scale house mouse single nucleotide polymorphism arrays (Yang et al ., ); these could provide a reliable phylogeographical history for the autosomes, although the cost of the chips may be prohibitive for phylogeographical studies.…”