Greenstone bodies emplaced upon or into clastic sediments crop out ubiquitously in the Hidaka belt (early Paleogene accretionary and collisional complexes exposed in the central part of northern Hokkaido, NE Japan), but the timing and setting of their emplacement has remained poorly constrained. Here, we report new zircon U-Pb ages for the sedimentary complexes surrounding these greenstones. The Hidaka Supergroup in the northern Hidaka belt is divided into four zones from west to east: zones S, U, and R, which contain in situ greenstones; and zone Y, which does not. Detrital zircons in zones S, U, and R have early Eocene U-Pb ages (55-47 Ma) and these strata are intruded by early Eocene granites (46-45 Ma), indicating that they were deposited between 55 and 46 Ma. Therefore, in situ greenstones in the northern Hidaka belt can only be explained by the subduction of the Izanagi-Pacific Ridge during 55-47 Ma. In contrast, the deposition of zone Y (the Yubetsu Group, younging to the west) began by 73-71 Ma, indicating that the accretionary prism in front of the paleo-Kuril arc formed at the same time as that in the Idonnappu zone and grew continuously until 48 Ma. The plutonic rocks that intruded the Hidaka belt are roughly divided into three stages: (1) early Eocene granites intruded the northern Hidaka belt at 46-45 Ma, during subduction of the Izanagi-Pacific Ridge; (2) the upper sequence of the Hidaka metamorphic zone was metamorphosed by magmatism at 40-37 Ma associated with the collision of the paleo-Kuril arc and NE Asia; and (3) younger granites intruded the entire Hidaka belt at 20-17 Ma in association with asthenospheric upwelling caused by back-arc expansion.