“…For Shigella spp., various methods have been developed using virulence regions or factors for its detection, such as: the ial region (invasion associated locus) present in the invasion plasmid, whose product is 320 bp and is encoded in the SSTT spa´s maximum operon (essential in the invasive phenotype) (Barrantes and Achi, 2011), Shiga toxin gene (Stx) (Ishrat et al, 1996;Villacrés et al, 2015), enterotoxin 1 (ShET-1), encoded protein in the bacterial chromosome by genes set1A (subunit A of the protein) of 309 bp and set1B (subunit B of the protein) of 147 bp (Villacres et al, 2015), insertion sequence 1 (IS1) 768-bp DNA fragment (Wen-Bin et al, 2007), 215 bp virA gene (Villalobo and Torres, 1998;Alipour et al, 2012), icsA gene encodes the IcsA protein, for intercellular mobility and dispersion (Alipour et al, 2012), and plasmid invasion antigen -H‖ or ipaH gene of 610 bp specific for Shigella spp., being determined as a stable gene to be detected because it is found in the chromosome and in plasmid DNA in multiple copies (Pichel and Caffer, 2016;Wang et al, 1997;Thiem et al, 2004;Lampel, 2009;Barrantes and Achi, 2011;Mokhtari et al, 2013;Radhika et al, 2014;Lin et al, 2010;Ranjbar et al 2014;Villacrés et al, 2015;Nadella et al, 2017). Likewise, molecular subtyping methods such as Pulsed-Field Gel Electrophoresis (PFGE) and Multilocus Variable-Number Tandem Repeat Analysis (MLVA) have been incorporated to determine the genetic relationships between isolates of Shigella spp., which contribute to epidemiological surveillance aspects, identification, and study of outbreaks caused in different geographical regions by the pathogen (Garitano et al, 2011;Pichel et al, 2012;Guzman-Herrador et al, 2011;Pichel and Caffer, 2016;Bakhshi et al, 2017). Another alternative method in the identification of isolates of food pathogens such as Shigella are those based on the analysis of proteins (mainly 2-20 KDa ribosomes) expressed by the genome through mass spectrometry, where a spectrum of specific masses, the -Footprint‖, for each genus and species by using Matrix Assisted Laser Desorption Ionization -Time Of Flight -Mass Spectrometry (MALDI-TOF ...…”