Large-scale biodiversity change is measured largely through the responses of a few taxonomic groups. Much less is known about the trends affecting most invertebrates and other neglected taxa, and it is unclear whether well-studied taxa, such as vertebrates, reflect changes in wider biodiversity. Here, we present and analyse trends in the UK distributions of over 5,000 species of invertebrates, bryophytes and lichens, measured as changes in occupancy. Our results reveal substantial variation in both the magnitude, direction and timing of change over the last forty-five years. Just one of the four major groups analysed, terrestrial non-insect invertebrates, exhibit the declining trend reported among vertebrates and butterflies. Both terrestrial insects and bryophytes & lichens increased in average occupancy. A striking pattern is found among freshwater species, which have undergone a strong recovery since the mid-nineties following two decades of decline. We show that, while average occupancy among most groups appears to have been stable or increasing, there has been substantial change in the relative commonness and rarity of individual species, indicating considerable turnover in community composition. Additionally, large numbers of species experienced substantial declines. Our results suggest a more complex pattern of biodiversity change in the UK than previously reported.