The alternative transcription factor B of Staphylococcus aureus affects the transcription of the cap gene cluster, required for the synthesis of capsular polysaccharide (CP), although this operon is lacking an apparent B -dependent promoter. Regulation of cap expression and CP production in S. aureus strain Newman was shown here to be influenced by B , the two-component signal transduction regulatory system ArlRS, and the yabJ-spoVG locus to different extents. Inactivation of arlR or deletion of the sigB operon strongly suppressed capA (CP synthesis enzyme A) transcription. Deletion of spoVG had a polar effect on yabJ-spoVG transcription and resulted in a two-to threefold decrease in capA transcription. Interestingly, immunofluorescence showed that CP production was strongly impaired in all three mutants, signaling that the yabJ-spoVG inactivation, despite its only partial effect on capA transcription, abolished capsule formation. trans-Complementation of the ⌬spoVG mutant with yabJ-spoVG under the control of its native promoter restored CP-5 production and capA expression to levels seen in the wild type. Northern analyses revealed a strong impact of B on arlRS and yabJ-spoVG transcription. We hypothesize that ArlR and products of the yabJ-spoVG locus may serve as effectors that modulate B control over B -dependent genes lacking an apparent B promoter.Staphylococcus aureus is a major nosocomial pathogen with the ability to cause a variety of diseases, including life-threatening infections. Like most microorganisms that are able to cause invasive diseases, S. aureus produces extracellular capsular polysaccharides (CPs), which are thought to be of importance in pathogenesis (reviewed in reference 35). Although 11 serologically distinct CPs were identified in S. aureus, the majority of clinical isolates produce CPs of serotype 5 (CP-5) or serotype 8 (CP-8). CPs protect S. aureus against opsonophagocytic killing by polymorphonuclear leukocytes (16,17,25,53,56) and enhance virulence in a number of animal models of staphylococcal infection (34,40,53,54,57). Expression of CPs is known to be influenced by various environmental signals in vitro and in vivo (reviewed in references 35 and 56), and transcription of the cap operon was shown to be modulated by regulatory elements, such as arlRS, agr, ccpA, mgr, sae, and sarA (7,8,23,24,26,27,39,48,52,55). Recent microarray analyses added the alternative factor B to the regulatory network controlling cap operon expression (3, 38) and indicated B to control capA transcription in a growth phasedependent manner (3). However, the lack of an apparent B consensus sequence in the promoter of capA suggested that B regulates cap transcription indirectly. Candidates for such downstream-acting regulators might be ArlRS and SarA, which are positively controlled by B in S. aureus (2, 3), although SarA was previously shown to have only a minor effect on cap expression and CP production in S. aureus (24). RNAIII of the agr locus, known to positively affect capA expression (7, 24, 55), could ...