The radical S-adenosyl-l-methionine (SAM)
superfamily is a large and growing group of enzymes that carry out complex
radical-mediated transformations. A one-electron reduction of SAM via the +1
state of the cubane [4Fe-4S] cluster generates a 5′-deoxyadenosyl
radical, which initiates turnover. The [4Fe-4S] cluster must be reduced from its
resting +2 to the catalytically active +1 oxidation state by an electron. In
practice, dithionite or the Escherichia coli flavodoxin
(EcFldA)/ferredoxin (flavodoxin):NADP+
oxidoreductase (Fpr)/NADPH system is used. Herein, we present a systematic
investigation of the reductive activation of the radical SAM enzyme CDG synthase
(BsQueE) from Bacillus subtilis comparing
biological and chemical reductants. These data show that either of the
flavodoxin homologs encoded by the B. subtilis genome,
BsYkuN or BsYkuP, as well as a series of
small molecule redox mediators, support BsQueE activity. With
dithionite as a reductant, activity of BsQueE is
~75-fold greater in the presence of BsYkuN and
BsYkuP compared to dithionite alone. By contrast,
EcFldA supports turnover to ~10-fold greater levels
than dithionite alone under the same conditions. Comparing the ratio of the rate
of turnover to the apparent binding constant for the flavodoxin homologs reveals
10- and 240-fold preference for BsYkuN over
BsYkuP and EcFldA respectively. The
differential activation of the enzyme cannot be explained by the abortive
cleavage of SAM. We conclude from these observations that the differential
activation of BsQueE by Fld homologs may reside in the details
of the interaction between the flavodoxin and the radical SAM enzyme.