Carbonate dissolution has been widely observed in shallow water tropical sediments. However, sediment budgets have generally not been closed with respect to the amount of acid required to produce the observed carbonate dissolution. Recently it has been suggested that enhanced oxygen transport into sediments through the roots and rhizomes of sea grasses might play a role in resolving this mass balance problem. We conducted studies of sea grass-carbonate sediment interactions around Lee Stocking Island, Exuma Islands, Bahamas to further examine this problem. Our studies showed that alkalinity, total dissolved inorganic carbon (⌺CO 2 ) and Ca 2ϩ increased with depth in the pore waters, while pH and calculated carbonate ion concentration decreased with depth. These observations are consistent with the occurrence of carbonate dissolution in these sediments. The magnitude of pore water alkalinity, ⌺CO 2 , and Ca 2ϩ changes was also related to sea grass density, with the largest gradients seen in the sediments of dense sea grass beds. Calculations suggested that less than ϳ50% of the O 2 needed to drive aerobic respiration (and ultimately carbonate dissolution via CO 2 production) could be supplied by transport processes such as diffusion, bioturbation, and physical pore water advection. Furthermore, the O 2 needed to balance the carbonate dissolution budget could be provided by the transport of Ͻ15% of the photosynthetically derived O 2 to the sediments through sea grass roots and rhizomes without enhancing the removal of carbonate dissolution end products. Thus sea grasses play an important role in controlling the rates of carbonate dissolution in shallow water tropical marine sediments.