Energy transition to renewable sources and more efficient technologies is needed for sustainable development. Although this transition is expected to take a longer time in developing countries, strategies that have been widely explored by the international academic community, such as advanced combustion modes and microgeneration, could be implemented more easily. However, the implementation of these well-known strategies in developing countries requires in-depth research because of the specific technical, environmental, social, and economic conditions. The present research relies on the use of biogas-fueled HCCI engines for power generation under sub-atmospheric conditions provided by high altitudes above sea level in Colombia. A small air-cooled commercial Diesel engine was modified to run in HCCI combustion mode by controlling the air–biogas mixture temperature using an electric heater at a high speed of 1800 revolutions per minute. An experimental setup was implemented to measure and control the most important experimental variables, such as engine speed, biogas flow rate, intake temperature, crank angle degree, intake pressure, NOx emissions, and in-cylinder pressure. High intake temperature requirements of around 320 ∘C were needed to achieve stable HCCI combustion; the maximum net indicated mean effective pressure (IMEPn) was around 1.5 bar, and the highest net indicated efficiency was close to 32%. Higher intake pressures and the addition of ozone to the intake mixture were numerically studied as ways to reduce the intake temperature requirements for stable HCCI combustion and improve engine performance. These strategies were studied using a one-zone model along with detailed chemical kinetics, and the model was adjusted using the experimental results. The simulation results showed that the addition of 500 ppm of ozone could reduce the intake temperature requirements by around 50 ∘C. The experimental and numerical results achieved in this research are important for the design and implementation of HCCI engines running biogas for microgeneration systems in developing countries which exhibit more difficult conditions for HCCI combustion implementation.