Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans

Takeda, Minoru; Suzuki, Ichirô; Koizumi, Jun–ichi

doi:10.1099/ijs.0.63429-0

Cited by 40 publications

(27 citation statements)

References 27 publications

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“…T contained menaquinone MK-7 as the predominant isoprenoid quinone (98.3 %) and MK-6 (1.7 %) as a minor component; this is in accordance with all other members of the genus Paenibacillus (Shida et al, 1997a;Takeda et al, 2005).…”

Section: Strain V10537supporting

confidence: 75%

Paenibacillus taichungensis sp. nov., from soil in Taiwan

Lee

Tien

Tai

et al. 2008

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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Among a large collection of Taiwanese soil isolates, a novel Gram-variable, rod-shaped, motile, endospore-forming bacterial strain, strain V10537 T , was subjected to a polyphasic study including 16S rRNA and gyrB gene sequence analysis, DNA-DNA hybridization experiments, cell wall peptidoglycan type, cellular fatty acid composition analysis and comparative phenotypic characterization. 16S rRNA gene sequence analysis indicated that the organism belonged to the genus Paenibacillus. Strain V10537T possessed meso-diaminopimelic acid as the diagnostic diamino acid of the peptidoglycan. It contained menaquinone MK-7 as the predominant isoprenoid quinone and anteiso-C 15 : 0 (53.6 %) and C 16 : 0 (19.0 %) as the major fatty acids. Phylogenetically, the most closely related species to strain V10537 T were Paenibacillus pabuli, Paenibacillus

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Section: Strain V10537supporting

confidence: 75%

Paenibacillus taichungensis sp. nov., from soil in Taiwan

Lee

Tien

Tai

et al. 2008

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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“…The characteristics of strain B538 T are consistent with those described for members of the genus Paenibacillus (Table 1), i.e. they produce a terminal endospore in a swollen sporangium, possess anteiso-C 15 : 0 as the major fatty acid and have a DNA G+C content in the range 39-55 mol% (Shida et al, 1997;Montes et al, 2004;Takeda et al, 2005).…”

supporting

confidence: 77%

Paenibacillus xinjiangensis sp. nov., isolated from Xinjiang province in China

Lim

Jeon

Park

et al. 2006

International Journal of Systematic and Evolutionary Microbiology

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Strain B538 T is a Gram-positive, motile, rod-shaped bacterium, which was isolated from Xinjiang province in China. This organism grew optimally at 30-35 6C and pH 8?0-8?5. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain B538 T belonged to the genus Paenibacillus and chemotaxonomic data (DNA G+C content, 47?0 mol%; major isoprenoid quinone, MK-7; cell wall type, A1c meso-diaminopimelic acid; major fatty acids, anteiso-C 15 : 0 and C 16 : 0 ) supported affiliation of the isolate with the genus Paenibacillus. Comparative 16S rRNA gene sequence analyses showed that the isolate was most closely related to Paenibacillus glycanilyticus DS-1 T , with 16S rRNA gene sequence similarity of 98?1 %; sequence similarities to other members of the genus Paenibacillus used in the phylogenetic tree were less than 96?5 %. The DNA-DNA relatedness between strain B538 T and P. glycanilyticus DS-1 T was about 8?0 %. On the basis of physiological and molecular properties, strain B538 T (=KCTC 3952 T =DSM 16970 T ) is proposed as the type strain of a novel species within the genus Paenibacillus, for which the name Paenibacillus xinjiangensis sp. nov. is proposed.The genus Paenibacillus was delineated from the members of group 3 Bacillus on the basis of 16S rRNA gene sequence analysis by Ash et al. (1993). Since the description of the genus, quite a few species belonging to the genus Paenibacillus have been isolated from various ecological habitats including warm springs (Saha et al., 2005), rice fields (Sánchez et al., 2005), alkaline soils , petroleum-hydrocarbon-contaminated sediment (Daane et al., 2002), the surface of sterilized seeds of garden peas (Šmerda et al., 2005), Antarctic sediments (Montes et al., 2004), the rhizosphere of trees (Rivas et al., 2005c) and air (Rivas et al., 2005a). These species also differ physiologically and produce diverse degradation enzymes (Rivas et al., 2005b;Takeda et al., 2005;Shida et al., 1997). These findings suggest that the members of the genus Paenibacillus may have important roles in environmental habitats. In this report, the taxonomic characterization is described of a novel aerobic, mesophilic, Gram-positive Paenibacillus species, which produces a spherical terminal endospore in a swollen sporangium. Strain B538 T was isolated from alkaline soil (pH 9?0, 1000 m above sea-level) collected in northern China (Heshuo area of Xinjiang province) by the serial dilution plating method with R2A agar (Difco) medium at 35 uC for 3 days. The isolate was routinely grown aerobically on TSB (tryptic soy broth; Difco) agar for 2 days at 32 uC, except where indicated otherwise. Gram staining was performed using the bioMérieux Gram Stain kit according to the manufacturer's instructions. Cell morphology was studied using TEM (JEM-1010; JEOL) as described by Jeon et al. (2005a). Motility was observed at 12 and 36 h with a light microscope (Nikon E600) according to a method described previously (Jeon et al., 2005b). Endospores were stained according to the method of Schaeffer-Fulto...

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“…The major cellular fatty acids are anteiso-C 15 : 0 and iso-C 16 : 0 (Chou et al, 2007;De Vos et al, 2009;Yao et al, 2014). The DNA G+C contents are in the range 39-59 mol % (Shida et al, 1997;Montes et al, 2004;Takeda et al, 2005;Yao et al, 2014). All members of the genus Paenibacillus for which polar lipid data are available show diphosphatidylglycerol (DPG) as the major polar lipid (Xiang et al, 2014); some species also contain phosphatidylethanolamine (PE) (Kim et al, 2010;Tang et al, 2011) and phosphatidylglycerol (PG) (Zhou et al, 2012).…”

mentioning

confidence: 99%

Paenibacillus cisolokensis sp. nov., isolated from litter of a geyser

Yokota

Ningsih

Nurlaili

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-positive, endospore-forming, aerobic and thermophilic bacterium, designated strain LC2-13A T , was isolated from Cisolok geyser, West Java, Indonesia, at 50 C. The isolate was rod-shaped and motile by means of peritrichous flagella. The major cellular fatty acids were iso-C 16 : 0 , C 16 : 0 and anteiso-C 15 : 0 and the major quinone was menaquinone 7. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The genomic DNA G+C content was 56.6 mol% and the major diagnostic diamino acid in the cellwall peptidoglycan was meso-diaminopimelic acid. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain LC2-13A T is related most closely to Paenibacillus kobensis DSM 10249 T (94.86 % similarity), Paenibacillus tarimensis SA-7-6 T (94.77 %) and Paenibacillus barengoltzii SAFN-016 T (94.77 %). On the basis of phenotypic, chemotaxonomic and phylogenetic evidence, strain LC2-13A T is affiliated to the genus Paenibacillus, but could be distinguished from recognized species of this genus. A novel species with the name Paenibacillus cisolokensis sp. nov. is thus proposed. The type strain is LC2-13A T (=UICC B-42 T =NRRL B-65368 T =DSM 101873 T ).

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Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans

Cited by 40 publications

References 27 publications

Paenibacillus taichungensis sp. nov., from soil in Taiwan

Paenibacillus taichungensis sp. nov., from soil in Taiwan

Paenibacillus xinjiangensis sp. nov., isolated from Xinjiang province in China

Paenibacillus cisolokensis sp. nov., isolated from litter of a geyser

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