Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres

Li, Qin; Li, Yashi; Liu, Xiaomeng; Chen, Sanfeng

doi:10.1007/s10482-021-01677-6

Cited by 5 publications

(1 citation statement)

References 71 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…According to the List of Prokaryotic Names with Standing in Nomenclature (https://lpsn.dsmz.de/genus/paenibacillus), by 27 December 2023, there were 300 species with a validly published name in the genus Paenibacillus with Paenibacillus polymyxa as the type species. Members of the genus Paenibacillus are Gram-stain-positive, rod-shaped, endospore-forming and contain C 16 : 0 , anteiso-C 15 : 0 and iso-C 16 : 0 as major fatty acids and MK-7 as the major respiratory quinone [2][3][4][5][6][7][8][9][10][11][12][13][14][15][16][17][18]. Members of the genus Paenibacillus are found in a variety of habitats, such as cold spring [11], soil [6], human faeces [10], blood culture [4], magnolia flowers [3] and rhizosphere of Zea mays [8].…”

Section: Introductionmentioning

confidence: 99%

Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge

Wu,

Yang,

Wan

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

A Gram-stain-positive bacterium capable of resisting 5.0 mM glufosinate, designated strain YX-27T, was isolated from a sludge sample collected from a factory in Wuxi, Jiangsu, PR China. Cells were rod-shaped, facultatively anaerobic, endospore-forming, and motile by peritrichous flagella. Growth was observed at 15–42 °C (optimum at 30 °C), pH 4.0–8.0 (optimum pH 7.0–7.5) and with 0–2.5% NaCl (w/v; optimum, 0.5 %). Strain YX-27T could tolerate up to 6.0 mM glufosinate. Strain YX-27T showed the highest 16S rRNA gene sequence similarity to Paenibacillus tianjinensis TB2019T (96.17 %), followed by Paenibacillus odorifer DSM 1539T (96.15 %), Paenibacillus sophorae S27T (96.04 %), Paenibacillus apii 7124T (96.02 %) and Paenibacillus stellifer DSM 14472T (95.87 %). The phylogenetic tree based on genome and 16S rRNA gene sequences indicated that strain YX-27T was clustered in the genus Paenibacillus but formed a separate clade. The genome size of YX-27T was 5.22 Mb with a G+C content of 57.5 mol%. The average nucleotide identity and digital DNA–DNA hybridization values between the genomes of strain YX-27T and 12 closely related type strains ranged from 70.8 to 74.8% and 19.8 to 23.0 %, respectively. The major cellular fatty acids were C16 : 0, anteiso-C15 : 0 and iso-C16 : 0. The major polar lipids were one diphosphatidylglycerol, one phosphatidylethanolamine, one phosphatidylglycerol, one phospholipid, four aminophospholipids and four unidentified lipids. The predominant respiratory quinone was MK-7. Based on phylogenetic, genomic, chemotaxonomic and phenotypic data, strain YX-27T was considered to represent a novel species for which the name Paenibacillus glufosinatiresistens sp. nov. is proposed, with YX-27T (=MCCC 1K08803T= KCTC 43611T) as the type strain.

show abstract

Section: Introductionmentioning

confidence: 99%

Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge

Wu,

Yang,

Wan

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

Paenibacillus piscarius sp. nov., a novel nitrogen-fixing species isolated from the gut of the armored catfish Parotocinclus maculicauda

Silva

Lemos

Vollú

et al. 2022

Antonie van Leeuwenhoek

View full text Add to dashboard Cite

A gram-positive, nitrogen-xing and endospore-forming strain, designated P121 T , was isolated from the gut of the armored cat sh (Parotocinclus maculicauda) and identi ed as a member of the genus Paenibacillus based on the sequences of the 16S rRNA encoding gene, rpoB, gyrB and nifH genes and phenotypic analyses. The most closely related species to strain P121 T were Paenibacillus rhizoplanae DSM 103993 T , Paenibacillus silagei DSM 101953 T and Paenibacillus borealis DSM 13188 T, with similarity values of 98.9%, 98.3% and 97.6%, respectively, based on 16S rRNA gene sequences. Genome sequencing revealed a genome size of 7,513,698 bp, DNA G + C content of 53.9 mol% and the presence of the structural nitrogenase encoding genes (nifK, nifD and nifH) necessary for nitrogen xation. Digital DNA-DNA hybridization (dDDH) experiments and average nucleotide identity (ANI) analyses between strain P121 T and the type strains of the closest species demonstrated that the highest values were below the thresholds of 70% dDDH (42.3% with P. borealis) and 95% ANI (84.28% with P. silagei) for bacterial species delineation, indicating that strain P121 T represents a distinct species. Its major cellular fatty acid was anteiso-C 15:0 (42.4%), and the major isoprenoid quinone was MK-7. Based on physiological, genomic, biochemical and chemotaxonomic characteristics, we propose that strain P121 T represents a novel species for which the name Paenibacillus piscarius sp. nov. is proposed (type strain = DSM 25072 = LFB-Fiocruz 1636).

show abstract

Microbial cell factories using Paenibacillus : status and perspectives

Yuan,

Chen,

et al. 2023

Critical Reviews in Biotechnology

View full text Add to dashboard Cite

Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres

Cited by 5 publications

References 71 publications

Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge

Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge

Paenibacillus piscarius sp. nov., a novel nitrogen-fixing species isolated from the gut of the armored catfish Parotocinclus maculicauda

Microbial cell factories using Paenibacillus : status and perspectives

Contact Info

Product

Resources

About