Paenibacillus xanthinilyticus sp. nov., isolated from agricultural soil

Kim, Donguk; Kim, Song‐Gun; Lee, Hyosun; Chun, Jongsik; Cho, Jang-Cheon; Ka, Jong-Ok

doi:10.1099/ijs.0.000359

Cited by 13 publications

(10 citation statements)

References 21 publications

(21 reference statements)

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“…According to the 16S rRNA gene sequence analysis using blast, strain DA-C8 T was classified in the family Paenibacillaceae and it was related to Paenibacillus cisolokensis LC2-13A T (93.9 % identity, NR_151901.1) [19], P. residui MC-246 T (93.6 % identity, NR_116949.1) [20], P. chitinolyticus HSCC596 (93.5 % identity, NR_040854.1) [21], P. xanthinilyticus 11N27 T (93.5 % identity, NR_137226.1) [22], P. senegalensis JC66 T (93.1 % identity, NR_125594.1) [23], Xylanibacillus composti K13 T (92.5 % identity, NR_159899.1) and P. yonginensis DCY84 T (92.5 % identity, NR_148743.1) [24] (Fig. 1).…”

Section: S Rrna Gene Phylogenymentioning

confidence: 99%

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Insulambacter thermoxylanivorax sp. nov., a thermophilic xylanolytic bacterium isolated from compost

Chhe

Uke

Baramee

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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We isolated and analysed a Gram-negative, facultatively thermophilic, xylan-degrading bacterium that we designated as strain DA-C8T. The strain was isolated from compost from Ishigaki Island, Japan, by enrichment culturing using beech wood xylan as the sole carbon source. The strain showed high xylan degradation ability under anaerobic growth conditions. The isolate grew at 37–60 °C (optimum, 55 °C) and pH 4.0–11.0 (optimum, pH 9.0). As well as xylan, strain DA-C8T could use polysaccharides such as arabinoxylan and galactan as carbon sources. Comparison of 16S rRNA gene sequences indicated that strain DA-C8T was most closely related to Paenibacillus cisolokensis LC2-13AT (93.9 %) and Paenibacillus chitinolyticus HSCC596 (93.5 %). In phylogenetic analysis, strain DA-C8T belonged to the same lineage as Xylanibacillus composti K13T (92.5 %), but there was less statistical support for branching (70 %). Digital DNA–DNA hybridization, average nucleotide identity values and average amino acid sequence identity between strain DA-C8T and P. cisolokensis LC2-13AT were 21.8, 68.3 and 58.2 %, respectively. Those between strain DA-C8T and X. composti K13 were 23.7, 67.7 and 57.6 %, respectively. The whole-genome DNA G+C content of strain DA-C8T was 52.3 mol%. The major cellular fatty acids were C16 : 0 (42.9 %), anteiso-C15 : 0 (20.0 %) and anteiso-C17 : 0 (16.7 %), the major quinone was menaquinone 7, and the major polar lipids were unidentified glycolipids. On the basis of phenotypic, chemotaxonomic and phylogenetic evidence, a novel genus is proposed—Insulambacter gen. nov.—for the novel species Insulambacter thermoxylanivorax sp. nov. The type strain is DA-C8T (=JCM 34211T=DSM 111723T).

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Section: S Rrna Gene Phylogenymentioning

confidence: 99%

“…chitinolyticus HSCC596 (93.5 % identity, NR_040854.1) [21], P. xanthinilyticus 11N27 T (93.5 % identity, NR_137226.1) [22], P. senegalensis JC66 T (93.1 % identity, NR_125594.1) [23], Xylanibacillus composti K13 T (92.5 % identity, NR_159899.1) and P.…”

Section: S Rrna Gene Phylogenymentioning

confidence: 99%

Insulambacter thermoxylanivorax sp. nov., a thermophilic xylanolytic bacterium isolated from compost

Chhe

Uke

Baramee

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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“…At the time of writing in October 2019, there are over 249 recognized species and four subspecies (www.bacterio.net/paenibacillus.html) [2]. Species of the genus Paenibacillus have been isolated from diverse habitats, such as soil [3–6], fresh water [7, 8], human faeces [9], pit mud [10], saline silt [11], warm springs [12], lake sediment [13] and plant rhizosphere [14–16]. Members of the genus Paenibacillus share the common characteristics of having spore-forming cells containing menaquinone 7 as a major or sole respiratory quinone and anteiso-C 15 : 0 as the major fatty acid.…”

Section: Full-textmentioning

confidence: 99%

Paenibacillus solisilvae sp. nov., isolated from birch forest soil

Kong

Zhang

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-positive, motile, rod-shaped bacterium, designated strain LAM7113 T , was isolated from soil sample collected from a birch forest in Xinjiang Uygur Autonomous Region, PR China. Strain LAM7113 T grew optimally at pH 8.0, 30 °C and in the presence of 1.0 % NaCl (w/v). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain LAM7113 T was closely related to members of the genus Paenibacillus, with the highest similarity to Paenibacillus baekrokdamisoli Back-11 T (96.2 %). The genomic DNA G+C content was 43.4 mol%. The values of average nucleotide identity and DNA-DNA hybridization were 66.1 and 27.0 %, respectively, by comparing the draft genome sequences of strain LAM7113 T and P. baekrokdamisoli Back-11 T. Anteiso-C 15 : 0 and iso-C 15 : 0 were identified as the major cellular fatty acids. Menaquinone-7 was detected as the predominant respiratory quinone. The major polar lipids were found to be diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, three unidentified aminophospholipids, three unidentified glycolipids, one unidentified phospholipid and two unknown polar lipids. Based on its phenotypic, phylogenetic and chemotaxonomic characteristics, strain LAM7113 T is proposed to represent a novel species of the genus Paenibacillus with the name Paenibacillus solisilvae sp. nov. The type strain is LAM7113 T (=CGMCC 1.16619 T =JCM 32513 T).

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“…The DNA G+C content of the type strain is 53 mol%. (Smerda et al, 2006); 5, P. xanthinilyticus 11N27 T (Kim et al, 2015a); 6, P. oenotherae DT7-4 T (Kim et al, 2015b); 7, P. cellulosilyticus PALXIL08 T (Rivas et al, 2006); 8, P. kobensis IFO 15729 T (Dasman et al, 2002;Kanzawa et al, 1995); 9, P. nanensis MX2-3 T (Khianngam et al, 2009). All strains are catalase-positive; use D-glucose and trehalose dihydrate as organic substrates; and are negative for indole production and citrate utilization.…”

Section: Description Of Paenibacillus Arachidis Sp Novmentioning

confidence: 99%