Pangenomics in Crop Plants

Monat, Cécile; Sabot, François

doi:10.1007/13836_2020_84

Cited by 1 publication

(1 citation statement)

References 138 publications

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“…Several pangenomes in different crops have been constructed, and were enlisted in recent studies. [77,[91][92][93][94] reviewed the relation between pangenome, machine learning, and genomic selection in plants.…”

Section: Evolution Domestication and Breeding Historymentioning

confidence: 99%

Pangenomics in Microbial and Crop Research: Progress, Applications, and Perspectives

Aggarwal

Singh

Choudhary

et al. 2022

Genes

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Advances in sequencing technologies and bioinformatics tools have fueled a renewed interest in whole genome sequencing efforts in many organisms. The growing availability of multiple genome sequences has advanced our understanding of the within-species diversity, in the form of a pangenome. Pangenomics has opened new avenues for future research such as allowing dissection of complex molecular mechanisms and increased confidence in genome mapping. To comprehensively capture the genetic diversity for improving plant performance, the pangenome concept is further extended from species to genus level by the inclusion of wild species, constituting a super-pangenome. Characterization of pangenome has implications for both basic and applied research. The concept of pangenome has transformed the way biological questions are addressed. From understanding evolution and adaptation to elucidating host–pathogen interactions, finding novel genes or breeding targets to aid crop improvement to design effective vaccines for human prophylaxis, the increasing availability of the pangenome has revolutionized several aspects of biological research. The future availability of high-resolution pangenomes based on reference-level near-complete genome assemblies would greatly improve our ability to address complex biological problems.

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