In the northern region of the Ecuadorian Amazon, there are papaya genotypes with acceptable production and fruit quality traits; however, they are heterogeneous. The aim of this research was to evaluate papaya genotypes for the selection of individuals through fruit quality traits. The study was carried out at the Central Amazon Experimental Station of Instituto Nacional de Investigaciones Agropecuarias, located in the canton La Joya de los Sachas, Orellana Province. A completely randomized design with a different number of observations according to the number of individuals per genotype was used. The recorded variables were: fruit weight (kg), pulp weight (kg), peel weight (kg), fruit diameter (cm), fruit length (cm), pulp thickness (cm), fruit firmness (kg-f), pH, total soluble solids (°Bx), titratable acidity, and flavor ratio. Data were subjected to one-way analysis of variance, mean comparison tests (Tukey 95%) for dendrograms, correlation matrix, and Biplot graphs. Results showed individuals with high production (more than 50 fruits/plant) and fruits with market demanded traits for fresh consumption (fruit weight between 0.2 and ≥ 2.0 kg, and soluble solids content ≥ 11.5 °Bx). In addition, ten elite individuals were identified as they meet the dual production and fruit quality traits, and must be considered for future breeding programmes.