“…The resulting hierarchical clustering (Figure 3Ad) was highly similar to both the hierarchical clustering of our unsupervised analysis (Figure 3Aa) and to the hierarchical clustering of genes selected by performing two independent statistical analyses between the two tumour groups (Figure 3Ab and Ac). Similarly, to investigate the possible transcriptional influence of high-risk HPV, we performed hierarchical cluster analysis on genes reported differentially Figure 3 (A) Hierarchical clustering of the unsupervised analysis on (Aa) the selection of 8449 probes, (Ab) the 337 individual genes defined by the Ttest, (Ac) the 363 individual genes defined by the SAM analysis together with collections of genes described by others relevant to our study and included within the group of 8449 probes, (Ad) HPV16-induced gene expression (Alazawi et al, 2002), (Ae) HPV16 E6/E7-induced gene expression (Nees et al, 2001), (Af) HPV31-induced gene expression (Chang and Laimins, 2000), (Ag) Gene expression in SSC (Loercher et al, 2004), (Ah) E2F-regulated genes (Ishida et al, 2001), (Ai) HPV16-and HPV18-induced gene expression (Santin et al, 2005) and, finally, (Aj) HPV18 E6/E7-induced gene expression (GarnerHamrick et al, 2004). (B) The total number of genes within each report cited.…”