The aims of the project were to study the architecture of the brain's neural networks in the process of perceiving individual stimuli that are personally significant, to evaluate the main parameters of immunity and systemic inflammation, and to relate those to brain damage markers and patterns of cognitive-affective disorders in patients with schizophrenia. Materials and Methods. The study involved 35 patients with paranoid schizophrenia and 17 people without cognitive impairment. Clinical information about patients was obtained from the database created in the Alekseev Psychiatric Clinical Hospital No.1, Moscow Department of Health. The immunological arm of the study included the determination of key cytokines, neurotrophic factors, circulating immune complexes, C-reactive protein, cortisol, and immunoglobulins in the blood serum of patients. To study the cognitive functions, original methods of selecting the stimuli and recording the vegetative reactions were used; those allowed for identifying the architecture of neural networks involved in the pathogenesis of schizophrenia.