“…The EF-Tu from this organism shares 82% sequence identity with the protein from Escherichia coli and has been shown to be similarly sensitive to kirromycin (16). The crystal structure presented here nicely explains the mutations reported to confer resistance to EF-Tu against the antibiotic (17)(18)(19)(20).…”
Aurodox is a member of the family of kirromycin antibiotics, which inhibit protein biosynthesis by binding to elongation factor Tu (EF-Tu). We have determined the crystal structure of the 1:1:1 complex of Thermus thermophilus EF-Tu with GDP and aurodox to 2.0-Å resolution. During its catalytic cycle, EF-Tu adopts two strikingly different conformations depending on the nucleotide bound: the GDP form and the GTP form. In the present structure, a GTP complex-like conformation of EF-Tu is observed, although GDP is bound to the nucleotide-binding site. This is consistent with previous proposals that aurodox fixes EF-Tu on the ribosome by locking it in its GTP form. Binding of EF-Tu⅐GDP to aminoacyl-tRNA and mutually exclusive binding of kirromycin and elongation factor Ts to EF-Tu can be explained on the basis of the structure. For many previously observed mutations that provide resistance to kirromycin, it can now be understood how they prevent interaction with the antibiotic. An unexpected feature of the structure is the reorientation of the His-85 side chain toward the nucleotide-binding site. We propose that this residue stabilizes the transition state of GTP hydrolysis, explaining the acceleration of the reaction by kirromycin-type antibiotics.
“…The EF-Tu from this organism shares 82% sequence identity with the protein from Escherichia coli and has been shown to be similarly sensitive to kirromycin (16). The crystal structure presented here nicely explains the mutations reported to confer resistance to EF-Tu against the antibiotic (17)(18)(19)(20).…”
Aurodox is a member of the family of kirromycin antibiotics, which inhibit protein biosynthesis by binding to elongation factor Tu (EF-Tu). We have determined the crystal structure of the 1:1:1 complex of Thermus thermophilus EF-Tu with GDP and aurodox to 2.0-Å resolution. During its catalytic cycle, EF-Tu adopts two strikingly different conformations depending on the nucleotide bound: the GDP form and the GTP form. In the present structure, a GTP complex-like conformation of EF-Tu is observed, although GDP is bound to the nucleotide-binding site. This is consistent with previous proposals that aurodox fixes EF-Tu on the ribosome by locking it in its GTP form. Binding of EF-Tu⅐GDP to aminoacyl-tRNA and mutually exclusive binding of kirromycin and elongation factor Ts to EF-Tu can be explained on the basis of the structure. For many previously observed mutations that provide resistance to kirromycin, it can now be understood how they prevent interaction with the antibiotic. An unexpected feature of the structure is the reorientation of the His-85 side chain toward the nucleotide-binding site. We propose that this residue stabilizes the transition state of GTP hydrolysis, explaining the acceleration of the reaction by kirromycin-type antibiotics.
“…This system is suited for studying the activity of EFTu variants in vivo. Since 7: thermophilus EF-Tu binds kirromycin and interacts with E. coli ribosomes, it also causes kirromycin sensitivity when produced in a kirromycin-resistant E. coli strain (Zeidler et al, 1993). EFTu show a similar effect (Fig.…”
Section: The Degradation Of [H85g]ef-tu Can Also Be Demonstrated In Vsupporting
confidence: 53%
“…Growth of E. coli strains on kirromycin was carried out as reported (Zeidler et al, 1993). The E. coli strain LBE2012/ pREP4 was transformed with the expression vectors pEFTulO, pEFTuH85G, pEFTuH85Q or pEFTuH85L.…”
“…were reported: passage through a French press [23,60,77], grinding of cells with twice bacteria mass of alumina (Al 2 O 3 ) [42,44], lysis with lysozyme (EDTA, sodium deoxycholate, DNase I treatment) [32,54,59,62,71,78], etc.…”
Section: The Large Scale Ef-tu Purification Protocolsmentioning
confidence: 99%
“…For example, recombinant Thermus thermophilus, Thermus aquaticus, and Thermotoga maritima EF-Tus (all of thermophilic organisms) overproduced in E. coli cells, remain all active after heating at 65 • C when EcEF-Tu is completely denatured and precipitated and can be quantitatively removed with most other E. coli proteins simply by centrifugation [23,[40][41][42][43][44]. Beside the purification of EF-Tu, Blank et al [43] also described purification of EF-Ts and EF-G from T. thermophilus by this heat treatment.…”
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