Calcium (Ca
2+
) is a ubiquitous messenger in many intracellular signalling cascades. With resting Ca
2+
concentrations around 100
nM
and peak amplitudes of Ca
2+
transients of the order of 10–100 μM, the specificity of the diverse Ca
2+
signals comes to a lesser degree from the affinities of the different biological Ca
2+
sensors and from the spatio‐temporal compartmentalisation of the Ca
2+
signal into subcellular nano‐ and microdomains. The measurement of such local and short‐lived Ca
2+
signals presents a major experimental challenge. Ca
2+
imaging with fluorescent indicators has initially involved synthetic small‐molecule chemical Ca
2+
indicators. While a large choice exists among molecules with different hues and Ca
2+
affinities and these molecules come in salt and ester forms for single‐cell or bulk loading, respectively, the subcellular targeting of Ca
2+
indicators and their long‐term use in live animals have remained problematic. The advent of genetically encoded Ca
2+
indicators that can be linked to different retention and targeting domains now permits the readout of local Ca
2+
signals, the targeting to different subcellular regions or cell types in intact tissue, the measurement of organelle Ca
2+
as well as long‐term recordings over months. For the detection of Ca
2+
nanodomains, hybrid organic–inorganic Ca
2+
nanobiosensors start to emerge as a promising alternative.
Key Concepts
Ca
2+
signals are local, both in space and time, and their spread and kinetics are shaped by the presence of endogeneous Ca
2+
‐binding molecules (Ca
2+
buffers).
Ca
2+
indicators are fluorescent exogeneous Ca
2+
buffers and as such distort the Ca
2+
signal to be measured.
Ca
2+
‐related fluorescence does not equal Ca
2+
concentration.
Genetically encoded Ca
2+
indicators are a powerful alternative to chemical small‐molecule organic indicators.
Measured Ca
2+
signals depend not only on the biological process studied and the properties of the fluorescent Ca
2+
indicator but also on the microscope and image acquisition parameters.
The measurement of local (rather than temporally and spatially averaged) Ca
2+
signals requires confinement of the dye volume, the fluorescence excitation volume, the fluorescence readout volume or a combination of these.