Neoscytalidium dimidiatum
(class
Dothideomycetes
) is a fungus responsible for canker disease in pitaya stems and fruits, leading to significant economic losses. However, little is known about the pathogenesis, family evolution, and genetic variants of this species. In this study, we report a high-quality genome sequence of
N. dimidiatum
based on the Nanopore sequencing technology platform for sequencing and Hi-C assembly technology for genome assembly. The genome contains 12 chromosomes (2
n
= 2× = 12; diploid), with a sequencing depth of 186.1×, encoding 12,349 proteins. Molecular phylogenetic analysis showed that
N. dimidiatum
is evolutionarily close to
Botryosphaeria dothidea
. Compared to other fungi, the
N. dimidiatum
genome contains many carbohydrate-active enzymes and secondary metabolites. Additionally, we predict that
N. dimidiatum
contains 121 candidate effectors that may play important roles in infection and colonization, promoting pathogenicity in pitaya. Nine of these effectors were confirmed to contain signal peptides and inhibit BAX/INF1-induced necrosis in
Nicotiana benthamiana
, demonstrating their importance during infection. Finally, we also confirm that
N. dimidiatum
does not form an appressorium or infection thread but instead infects pitaya via open stomata. In conclusion, the results provide a foundation for future research on
N. dimidiatum
and the control of pitaya canker.
IMPORTANCE
Pitaya canker is a significant disease in the pitaya industry in China, causing significant economic losses. Therefore, systematic research on
Neoscytalidium dimidiatum
, the fungus implicated in pitaya canker, is essential for comprehending the pathogenesis of this disease and developing effective control strategies. We applied comparative genomics to reveal the genetic evolution, metabolic diversity, environmental adaptation, and pathogenicity of
N. dimidiatum
, providing ideal targets for studies of pathogenesis and molecular targets for fungicide development. Moreover, the systematic study of the
N. dimidiatum
growth cycle, morphological characteristics, and molecular phylogenetic analysis can promote a comprehensive understanding of its genetic basis.