Subclinical necrotic enteritis (
NE
) was induced in broiler chicks using a high dose of
Eimeria
spp. vaccine in the drinking water on day 9, and
Clostridium perfringens
(
Cp
) culture mixed in the feed on days 14 and 15. The aim was to evaluate the effects of probiotic
Bacillus amyloliquefaciens
strain H57 (
H57
) in preventing NE in chicks. Day-old Ross 308, male broilers were weighed and randomly assigned to 6 treatment groups (6 replicate cages/treatment and 8 birds/cage). Birds in group 1 (control) were fed the basal wheat-soybean diet without H57 or NE infection; in group 2 (
Eimeria
) were treated with
Eimeria
alone; in group 3 (
Cp
) were treated with
Cp
alone; in group 4 (NE) received both
Eimeria
and
Cp
; in group 5 (NE-H57) received NE infection and H57; and group 6 (H57) received H57. The basal diet of chicks in groups 5 and 6 was supplemented with H57 at a density of 2 × 10
8
spores/g feed from 1 D of age. On day 21, there were no significant treatment effects on BW and feed intake between control and H57 birds. However, on day 21, the feed conversion ratio of NE-H57 birds was significantly improved when compared with NE birds (1.28 vs. 1.36;
P
< 0.001). Birds challenged with NE had a higher occurrence of pasty vent than birds infected with either
Eimeria
,
Cp
, or NE-H57 (41 vs. 27 vs. 29 vs. 19%, respectively;
P
< 0.001). Intestinal lesion scores of NE birds were also higher than those of
Eimeria
,
Cp
, and NE-H57 birds (5.67 vs. 2.56 vs. 2.78 vs. 2.10, respectively;
P
< 0.001) and correlated with pasty vent (Pearson's r = 0.56;
P
< 0.001). Microscopic evaluation showed mucosal damage and necrosis in NE birds. In contrast, villi from NE-H57 birds were normal, with no damage or infiltration with
Eimeria
or
Cp
. H57 appears to be effective in challenged birds, as it maintained epithelial barrier integrity and improved feed efficiency.