In the present study we investigated the possible relationship between the ULF geomagnetic activity and the variations of several atmospheric parameters. In particular, we compared the ULF activity in the Pc1‐2 frequency band (100 mHz–5 Hz), computed from geomagnetic field measurements at Terra Nova Bay in Antarctica, with the tropospheric temperature T, specific humidity Q, and cloud cover (high cloud cover, medium cloud cover, and low cloud cover) obtained from reanalysis data set. The statistical analysis was conducted during the years 2003–2010, using correlation and Superposed Epoch Analysis approaches. The results show that the atmospheric parameters significantly change following the increase of geomagnetic activity within 2 days. These changes are evident in particular when the interplanetary magnetic field Bz component is oriented southward (Bz<0) and the By component duskward (By>0). We suggest that both the precipitation of electrons induced by Pc1‐2 activity and the intensification of the polar cap potential difference, modulating the microphysical processes in the clouds, can affect the atmosphere conditions.