Pedobacter bauzanensis sp. nov., isolated from soil

Abstract

A Gram-negative, aerobic, rod-shaped, non-motile bacterium, designated BZ42 T , was isolated from the soil of an industrial site. Strain BZ42T was able to grow at 5-25 6C. The major fatty acids were iso-C 15 : 0 (46.2 %), C 16 : 1 v7c and/or iso-C 15 : 0 2-OH (23.2 %) and iso-C 17 : 0 3-OH (9.1 %). The predominant menaquinone was MK-7. The genomic DNA G+C content was 36.5 mol% (HPLC). 16S rRNA gene sequence phylogenetic analysis revealed that strain BZ42T was a member of the genus Pedobacter, family Sphingobacteriaceae, and 16S rRNA gene sequence similarities between strain BZ42 T and the type strains of species of the genus Pedobacter with validly published names were 90.4-93.2 %. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain BZ42 T was considered to represent a novel species of the genus Pedobacter, for which the name Pedobacter bauzanensis sp. nov. is proposed. The type strain is BZ42

Pseudomonas bauzanensis sp. nov., isolated from soil

“…The present study deals with the characterization of a novel strain of the genus Pseudomonas that was isolated from soil and is able to grow at low temperatures. Strain BZ93 T was isolated from soil from an industrial site (containing high amounts of heavy oil and heavy metals) in Bozen, South Tyrol, Italy, as described previously (Zhang et al, 2010). The soil was sampled and processed under sterile conditions in spring 2008.…”

“…Strain BZ93 T was isolated from soil from an industrial site (containing high amounts of heavy oil and heavy metals) in Bozen, South Tyrol, Italy, as described previously (Zhang et al, 2010). The soil was sampled and processed under sterile conditions in spring 2008.…”

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer

“…In light of these observations, and the metabolic repertoire of cultured Pedobacter species (e.g. Pedobacter bauzanensis) that have not been reported to ferment glucose (Muurholm et al, 2007;Zhang et al, 2010), it is more likely that lactate is utilized as a carbon source for biosynthesis within the SAGs. However, the difficulty in identifying fermentative metabolism in chemoheterotrophic bacteria means that in this instance we cannot positively identify a role for lactate dehydrogenase in the SAGs.…”

Pedobacter xixiisoli sp. nov., isolated from bank soil

“…At the time of writing, the genus Pedobacter comprises 46 species with validly published names, with a rapid increase in number since 2006. The majority of these species were isolated from soil (Steyn et al, 1998;Ten et al, 2006;Yoon et al, 2006Yoon et al, , 2007aRoh et al, 2008;Gordon et al, 2009;Jeon et al, 2009;Zhang et al, 2010;Luo et al, 2010;Zhou et al, 2012;Jung et al, 2012;Hoang et al, 2013;Yang et al, 2013;Oh et al, 2013;Margesin & Zhang, 2013;Kook et al, 2014) and water (Gallego et al, 2006;Hwang et al, 2006;Baik et al, 2007;Muurholm et al, 2007;Asker et al, 2008;Urios et al, 2013), and the others were collected from glaciers (Margesin et al, 2003;Shivaji et al, 2005;Qiu et al, 2014), a nitrifying inoculum (Vanparys et al, 2005), the plant rhizosphere (Kwon et al, 2007(Kwon et al, , 2011, compost (Lee et al, 2009), sediment Gordon et al, 2009) and chilled food (Derichs et al, 2014). Members of the genus Pedobacter are aerobic, non-spore-forming, rod-shaped, Gram-stain-negative bacteria positive for catalase and oxidase reactions and negative for gelatinase, urease, indole production and nitrate reduction (Zhou et al, 2012).…”