ExperimentalAtomic force microscopy: Polymer-DNA complexes at a ratio of 1:1 and final DNA concentration of 0.1 mM were prepared in 5 ml Tris-HCl (pH 7.4). The solutions were either used undiluted or diluted further in ultrapure water. For each sample, 30 µl aliquot was adsorbed for two minutes on freshly cleaved muscovite mica. The surface was rinsed thoroughly with 10 ml of ultrapure water and dried with Argon. AFM imaging was performed in acoustic mode at a scanning speed of 1Hz with an Agilent 5500 (Agilent, Santa Barbara, CA) using high frequency (300 kHz) silicon cantilevers with a tip radius of 2-5 nm (TESP-SS, Veeco, Santa Barbara, CA) [26]. Images were treated using the software Gwyddion (http://gwyddion.net/). FTIR spectroscopy: Infrared spectra were recorded on a FTIR spectrometer (Impact 420 model), equipped with DTGS (deuterated triglycine sulfate) detector and KBr beam splitter, using AgBr windows. Spectra were collected after 2h incubation of polymer with the DNA solution and measured. Interferograms were accumulated over the spectral range 4000-600 cm -1 with a nominal resolution of 2 cm -1 and a minimum of 100 scans. The difference spectra [(DNA solution + polymer) -(DNA solution)] were obtained, using a sharp band at 968 (DNA) as internal reference. This band, which is due to sugar C-C stretching vibrations, exhibits no spectral changes (shifting or intensity variations) upon polymer-polynucleotide complexation, and cancelled out upon spectral subtraction [26].CD spectroscopy: The CD spectra of DNA and its polymer adducts were recorded at pH 7.3 with a Jasco J-720 spectropolarimeter. For measurements in the Far-UV region (200-320 nm), a quartz cell with a path length of 0.01 cm was used. Six scans were accumulated at a scan speed of 50 nm per minute, with data being collected at every nm from 200 to 320 nm. Sample temperature was maintained at 25 °C using a Neslab RTE-111Submit Manuscript | http://medcraveonline.com J Nanomed Res 2015, 2(4): 00038
AbstractWe have reviewed the effects of synthetic polymers on DNA compaction and particle formation. Synthetic polymers such as poly (ethylene glycol) PEG-(PEG-3350, PEG-6000), methoxypoly (ethylene glycol) anthracene (mPEGanthracene), methoxypoly (ethylene glycol) poly (amidoamine) (mPEG-PAMAM-G3), (mPEG-PAMAM-G4) and poly(amidoamine) (PAMAM-G4) alter DNA structure and dynamic. The spectroscopic results and atomic force microscopic (AFM) were analysed and the effect of synthetic polymer complexation on DNA stability, aggregation, compaction and particle formation are discussed. A comparison of the overall binding constants showed that the order of binding PAMAM-G4>PEG-6000>PEG-3350>mPEG-anthracene> mPEG-PAMAMG4>mPEG-PAMAM-G3. The morphology and ultrastructure of polymer-DNA adducts showed major DNA compaction and particle formation induced by synthetic polymers. The generated information is useful for the application of synthetic nanoparticles in gene delivery.