“…Quantitative real-time PCR (qPCR) was used to analyze the mRNA expression of previously reported markers for intestinal inflammation and function, including immunoglobulin M heavy chain (IgM), cluster of differentiation 8 (CD8), T-cell receptor beta (TCR), Interleukin 1 (IL1), transforming growth factor  (TGF), major histocompatibility complex I (MHC-I), major histocompatibility complex II (MHC-II), tumor necrosis factor ␣ (TNF␣), caspase 3 (Casp3), proliferating cell nuclear antigen (PCNA), fatty acid binding protein (intestinal; FABP2), intestinal peptide transporter (PepT1) and Aquaporin 8 (Aqp8) (Krogdahl et al, 2000;Skugor et al, 2011;Kortner et al, 2012;Marjara et al, 2012;Terova et al, 2013;Venold et al, 2013). Previously validated and published gene-specific primers (Table 2) were used to quantify TCR, MHC-II (Cerezuela et al, 2012), IgM (Estensoro et al, 2012), IL1 ), FABP2 (Calduch-Giner et al, 2012, for the remaining genes primers were designed using Primer3 software (http://frodo.wi.mit.edu/primer3).…”