Abstract. Continuous anaerobic ammonia oxidation (Anammox) process in multistage anaerobic baffled (MABR) reactor was investigated. The reactor was operated for approximately 150 days at constant hydraulic retention time (HRT) of 48 h and was fed with synthetic wastewater containing nitrite and ammonium as main substrates. The MABR was inoculated with mixed culture bacteria collected from activated sludge plant (41.6 g MLSS/L and 19.1 g MLVSS/L). The MABR reactor exhibited excellent performance for the start-up of Anammox process within a period of 35 days. The start-up period was divided into four successive phases; cell lysis, lag, activity elevation and steady state. Total inorganic nitrogen (TIN) removal efficiency of 96.8± 0.9% was achieved at steady state conditions, corresponding to nitrogen removal rate (NRR) of 50.2±1.7 mg N/L·d. Moreover, the effect of HRT on the Anammox process was assessed with applying five different HRTs of (48, 38.4, 28.8, 19.2 and 9.6 h). Decreasing HRT from 48 to 9.6 h reduced the removal efficiencies of NH4-N, NO2-N and TIN from 97.7±2.2 to 49.0±9.8%, from 95.7±1.9 to 71.0±8.5% and from 96.8±0.9 to 57.9±9.1%, respectively, that corresponding to reduction in NRR from 50.8±1.2 mg N/L·d at HRT of 48 h to 32.5±5.0 mg N/L·d at HRT of 9.6 h.