Synchronization of the mammalian master circadian pacemaker to the daily light/dark cycle is mediated exclusively through retinal photoreceptors. The mammalian retina itself is also a self-sustained circadian oscillator. Here we report that the retinal molecular circadian clock can be entrained by lighting cycles in vitro, but that rods, cones, and melanopsin (Opn4) are not required for this entrainment. In vivo, retinas of Opn4;rd1/rd1 mice synchronize to light/dark cycles regardless of the phase of the master circadian pacemakers of the suprachiasmatic nuclei or the behavior of the animal. These data demonstrate that the retina uses a separate mechanism for local entrainment of its circadian clock than for entrainment of organism-level rhythmicity.circadian rhythm M ost mammalian tissues contain autonomous circadian clocks, and these oscillators are synchronized by the "master circadian pacemaker," which is localized in the suprachiasmatic nucleus (SCN) of the hypothalamus (1). The SCN controls the rhythms of diverse physiological functions, including feeding, temperature cycles, and circulating hormones, which in turn synchronize the clocks of tissues throughout the body (2). Following lesions of the SCN, animal behavior becomes arrhythmic and internal synchrony among tissues throughout the body is lost (3-5). Photic entrainment of the mammalian SCN (and thus the animal's behavior) is mediated exclusively through photoreception in the retina (6, 7). Although outer retinal (rod/cone)-based and melanopsinexpressing retinal ganglion cell-based photoreceptors are each sufficient for circadian entrainment of behavior, animals lacking rods, cones, and melanopsin (Opn4) cannot entrain to external light/dark cycles (8-10).The mammalian retina itself is also a self-sustained circadian oscillator (11), and many retinal physiologic functions oscillate with a 24-h period. These include transcription and translation of photoreceptor genes, neurotransmitter synthesis and release, interphotoreceptor coupling, disk shedding in rods, and amplitude of the electroretinogram (ERG) (12-18). More than 1,000 genes in the retina have a significant 24-h diurnal rhythm in transcript abundance (15). When the core circadian clock gene Bmal1 is deleted specifically in the retina (rendering it incapable of free-running rhythmicity), transcriptional and ERG rhythmicity are lost and ERG amplitudes are reduced at all times of day, suggesting that local circadian rhythmicity is required for normal retinal function (15). The circadian clock in the mammalian retina persists in culture, and can be measured ex vivo by neurotransmitter release or by luminescent reporters of circadianly expressed core clock genes (11,19). Importantly, the retinal rhythm of melatonin synthesis can be synchronized directly by light/dark cycles in culture (11,20), demonstrating that the SCN is not necessary for synchronization of retinal rhythms. Here we demonstrate that the retinal clock remains entrained to the light/dark cycle regardless of SCN and behavioral phase...