The transport of LDL-derived cholesterol from lysosomes to peroxisomes is mediated by membrane contacts, which are facilitated by the lysosomal protein synaptotagmin VII and the peroxisomal lipid phosphatidylinositol 4, 5-bisphosphate (PI(4,5)P 2 ). Here, we used RNA interference to search for regulators of PI(4,5)P 2 and to study the effects of altered PI(4,5)P 2 homeostasis on cholesterol transport. We found that knockdown of phosphatidylinositol 5-phosphate 4-kinase type-2 alpha (PIP4K2A) reduced peroxisomal PI(4,5)P 2 levels, decreased lysosome-peroxisome membrane contacts, and increased accumulation of lysosomal cholesterol in human SV-589 fibroblasts. Forced expression of peroxisome-localized, kinase-active PIP4K2A in the knockdown cells reduced cholesterol accumulation, and in vitro addition of recombinant PIP4K2A restored membrane contacts.These results suggest that PIP4K2A plays a critical role in intracellular cholesterol transport by up-regulating PI(4,5)P 2 in the peroxisome membrane. Further research into PIP4K2A activity may inform future therapeutic interventions for managing lysosomal storage disorders.