Human polymerase (pol), the product of the human POLK (DINB1) gene, is a member of the Y superfamily of DNA polymerases that support replicative bypass of chemically modified DNA bases (Ohmori, H., Friedberg, E. C., Fuchs, R. P., Goodman, M. F., Hanaoka, F., Hinkle, D., Kunkel, T. A., Lawrence, C. W., Livneh, Z., Nohmi, T., Prakash, L., Prakash, S., Todo, T., Walker, G. C., Wang, Z., and Woodgate, R. (2001) Mol. Cell 8, 7-8; Gerlach, V. L., Aravind, L., Gotway, G., Schultz, R. A., Koonin, E. V., and Friedberg, E. C. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 11922-11927). Pol is shown here to bypass 5,6-dihydro-5,6-dihydroxythymine (thymine glycol) generated in two different DNA substrate preparations. Pol inserts the correct base adenine opposite thymine glycol in preference to the other three bases. Additionally, the enzyme correctly extends beyond the site of the thymine glycol lesion when presented with adenine opposite thymine glycol at the primer terminus. However, steady state kinetic analysis of nucleotides incorporated opposite thymine glycol demonstrates different misincorporation rates for guanine with each of the two DNA substrates. The two substrates differ only in the relative proportions of thymine glycol stereoisomers, suggesting that pol distinguishes among stereoisomers and exhibits reduced discrimination between purines when incorporating a base opposite a 5R thymine glycol stereoisomer. When extending beyond the site of the lesion, the misincorporation rate of pol for each of the three incorrect nucleotides (adenine, guanine, and thymine) is dramatically increased. Our findings suggest a role for pol in both nonmutagenic and mutagenic bypass of oxidative damage.Many types of base damage in DNA cause structural modifications that can result in the stalling or complete arrest of high fidelity DNA synthesis during DNA replication (3, 4). However, the potential for cell death attendant on arrested DNA replication can be mitigated by a mechanism called translesion DNA synthesis (TLS) (5-7). This process effects the replicative bypass of sites of base damage, allowing high fidelity semiconservative DNA synthesis to continue. Important new insights into the biochemical mechanism of TLS have recently been gained by the discovery of a number of new DNA polymerases, all of which share the properties of limited fidelity and processivity when copying undamaged DNA, as well as a lack of 3Ј 3 5Ј proofreading exonuclease activity (1, 5-9). Multiple DNA polymerases of this class have been shown to support TLS of one or more types of base damage in vitro. In some instances, this role is supported by genetic or other biological evidence. Hence, a general theme is beginning to emerge that the redundancy for error-prone DNA polymerases in prokaryotic and especially in eukaryotic cells reflects a requirement for the bypass of multiple types of base damage that can arrest normal DNA replication (5). Recent structural studies on a number of these polymerases suggest that translesion synthesis is effected by a less ...