A total of 258 bovine-associated Staphylococcus aureus isolates from the United States, Chile, and the United Kingdom, plus the reference isolate S. aureus Newbould 305 (NCIMB 702892), were analyzed by multilocus sequence typing (MLST). A collection of previously characterized United Kingdom isolates were also included in the analysis. The results demonstrated that MLST is suitable for the differentiation of bovine S. aureus isolates from various sites (milk, teat skin, milking machine unit liners, hands, and bedding) and countries. The theory of the host specificity of S. aureus is supported by the detection of a previously undescribed clonal complex that comprised 87.4% of the isolates studied, with representatives from all geographic locations investigated. This suggests that a single clonal group has achieved a widespread distribution and is responsible for the majority of infections. Some sequence types (STs; ST25, ST115, ST124, and ST126) demonstrated site specificity, as they were significantly (P < 0.05) associated with milk or teat skin.Staphylococcus aureus is a major cause of bovine mastitis and is spread from cow to cow (skin or milk) via the milking machine (35, 57). Environmental spread may also occur, since strains of S. aureus have been isolated from the environment of dairy farms and from other species that are present on dairy farms (32,39).A number of studies have identified potential sources of the pathogen and have investigated strain-specific differences (19, 40). The major potential sources identified were milk, body sites, and, to a lesser extent, the environment (40). Studies investigating the global population structure of bovine S. aureus suggest that a relatively few specialized clones are responsible for the majority of intramammary infections (IMIs) (26, 55), although some authors did not report between-farm genetic homogeneity (25,46). Most of these studies have used techniques such as phage typing (19, 40) and pulsed-field gel electrophoresis (PFGE) (7, 25) to compare isolates. These methods lack intercenter reproducibility (55). Library typing systems such as binary typing (BT) (53) and multilocus sequence typing (MLST) (31) have been developed to overcome these problems by producing results that are repeatable between laboratories and over time.The aim of this study was to investigate the effectiveness of MLST as a method for the typing of S. aureus isolates of bovine origin from a number of distinct geographical sources. A collection of isolates previously characterized by phage typing (19) and by PFGE and binary typing (55) was used to compare these methods to MLST. The data were then used in a preliminary analysis of the evolutionary and population biology of S. aureus isolates of bovine origin.