Protein localization mechanisms dictate the functional and structural specialization of cells. Of the four polar surface organelles featured by the dimorphic bacterium Caulobacter crescentus, the stalk, a cylindrical extension of all cell envelope layers, is the least well characterized at the molecular level. Here we apply a powerful experimental scheme that integrates genetics with high-throughput localization to discover StpX, an uncharacterized bitopic membrane protein that modulates stalk elongation and is sequestered to the stalk. In stalkless mutants StpX is dispersed. Two populations of StpX were discernible within the stalk with different mobilities: an immobile one near the stalk base and a mobile one near the stalk tip. Molecular anatomy provides evidence that (i) the StpX transmembrane domain enables access to the stalk organelle, (ii) the N-terminal periplasmic domain mediates retention in the stalk, and (iii) the C-terminal cytoplasmic domain enhances diffusion within the stalk. Moreover, the accumulation of StpX and an N-terminally truncated isoform is differentially coordinated with the cell cycle. Thus, at the submicron scale the localization and the mobility of a protein are precisely regulated in space and time and are important for the correct organization of a subcellular compartment or organelle such as the stalk.Caulobacter | fluorescence loss in photobleaching/fluorescence recovery after photobleaching | polar organelle | protein localization | protein mobility M echanisms exist in prokaryotic and eukaryotic cells to direct specialized proteins to distinct subcellular sites where they execute topologically constrained functions, for example, morphogenesis (1). Dissecting the underlying molecular mechanisms for localization is facilitated by the availability of suitable proteins that can be used as molecular probes. In the dimorphic Gramnegative bacterium Caulobacter crescentus localization probes for cellular organelles such as the medial cytokinetic apparatus, the cell-fate signaling hub at the old pole, and surface organelles positioned at the new pole (pili or the flagellum) led to the establishment of molecular localization hierarchies (2-5). C. crescentus also features another polar surface organelle, the stalk, whose molecular anatomy is not well characterized. Until recently, no molecular probes for the study of the stalk ultrastructure and biogenesis were known. Conducting a cytological survey of 75% of the predicted translation products of Caulobacter, Werner et al. uncovered candidate proteins that appear associated with the stalk (6). The stalk is a cylindrical protrusion of all envelope layers (inner membrane, periplasm, outer membrane, and S-layer) at the old cell pole and encloses cytoplasmic material that is free of chromosomal DNA, ribosomes, and most cytoplasmic proteins (7,8). The absence of ribosomes precludes a cotranslational protein targeting mechanism within the stalk. Instead, mobile molecules might diffuse into the stalk where they are subsequently retained, i.e.,...