In randomized clinical trials (RCTs), it is assumed that nonspecific effects beyond action of pharmacological agents are roughly equivalent in drug and placebo treatment groups. Hence, since the inception of RCTs, drug efficacy is determined by comparing outcomes in active to those in placebo control arms. However, quantitation of efficacy is based on an unproven assumption, that drug and placebo responses are always additive. Response to treatment in RCTs can be differentially influenced by the perturbing effects of patient expectations, side effects, and pharmacogenomic interactions in both drug and placebo arms. Ability to control for these effects requires understanding of when and where they arise, how to mitigate, analyze, and even leverage their impact. Here, we examine three factors that influence additivity: expectation, side effects, and pharmacogenomics. Furthermore, to provide novel insights into nonadditivity and solutions for managing it, we introduce systems pharmacogenomics, a network approach to integrating and analyzing the effects of the numerous interacting perturbations to which a patient is exposed in RCTs.In randomized placebo controlled clinical trials (RCTs), the placebo treatment arm is designed to capture and control for the nonspecific variables that can influence clinical outcomes. These include regression to the mean, spontaneous remission, changes due to the natural course of the disease, and placebo effects. Placebo effects refer to clinical improvement derived from the patient's interactions with the clinician, the information they receive with regard to their condition and treatment, and the therapeutic ritual performed in the clinical setting. 1 Hence, factors that influence clinical outcomes in RCTs derive from the "players" engaged in the therapeutic encounter and their emergent properties. From the patient's characteristics, the physician's appearance and manner, and the information communicated, to the mise-en-scène, and the pharmacological agent's properties, this complexity of factors can make predicting that there will be a statistically significant drug-placebo difference difficult. It is this complexity that placebo controls, along with randomization and double-blinding, were designed to reduce, allowing us to use simple arithmetic to subtract the nonspecific effects captured in the placebo control arm to reveal the efficacy of the drug. Hence, determination of drug efficacy relies on the assumption that the placebo and drug responses are additive (i.e., drug efficacy = drug response -placebo response).For drugs like antimicrobials or chemotherapeutics that target well-defined exogenous pathogens or cellular processes not under the influence of placebo effects, the additivity assumption seems to hold, allowing us to establish successfully the efficacy of numerous medications. [2][3][4] In contrast, treatments for conditions such as pain, anxiety, and depression, and a wide variety of functional and central sensitization disorders defined less by pathophysiology and more...