We used antisense morpholino oligonucleotides (AMOs) to redirect and restore normal splicing of three prototypic splicing mutations in the ataxia-telangiectasia mutated (ATM) gene. Two of the mutations activated cryptic 5 or 3 splice sites within exonic regions; the third mutation activated a downstream 5 splice site leading to pseudoexon inclusion of a portion of intron 28. AMOs were targeted to aberrant splice sites created by the mutations; this effectively restored normal ATM splicing at the mRNA level and led to the translation of full-length, functional ATM protein for at least 84 h in the three cell lines examined, as demonstrated by immunoblotting, ionizing irradiation-induced autophosphorylation of ATM, and transactivation of ATM substrates. Ionizing irradiation-induced cytotoxicity was markedly abrogated after AMO exposure. The ex vivo data strongly suggest that the disease-causing molecular pathogenesis of such prototypic mutations is not the amino acid change of the protein but the mutated DNA code itself, which alters splicing. Such prototypic splicing mutations may be correctable in vivo by systemic administration of AMOs and may provide an approach to customized, mutation-based treatment for ataxia-telangiectasia and other genetic disorders.ataxia-telangiectasia mutated ͉ mutation-based treatment T his study addresses the restoration of normal splicing in three ataxia-telangiectasia mutated (ATM) splicing mutations by exposure of ataxia-telangiectasia (A-T) cells to antisense morpholino oligonucleotides (AMOs). Antisense oligonucleotides have been used to restore pre-mRNA splicing in other disease models (1-8); however, the therapeutic rationale for each varies considerably and, to our knowledge, none has addressed an intranuclear or DNA repair disorder. Furthermore, we believe that A-T offers several advantages for exploring the therapeutic potential of AMOs, such as (i) the availability of many surrogate markers for evaluating ATM function, ex vivo and in vivo, and (ii) a well characterized spectrum of ATM mutations supported by an extensive cell repository of lymphoblastoid cell lines (LCLs) derived from patients with those mutations (9-12). The LCLs allow pre-mRNA mechanisms to be dissected in great detail. The principles gleaned can then be extended to other tissue targets, such as neuronal cells.A-T is a progressive autosomal recessive neurodegenerative disorder resulting from mutations in ATM (13). This gene includes 66 exons and encodes a 13-kb mature transcript with an ORF of 9,168 nt. The ATM protein is a serine/threonine kinase with Ͼ30 phosphorylation targets (14, 15). It affects control of cell cycle checkpoints, repair of dsDNA breaks, responses to oxidative stress, and apoptosis and is a potent tumor suppressor (16)(17)(18)(19). ATM is constitutively expressed in all tissues, primarily in the nucleus. So far no therapy exists for this disorder.ATM protein is not detectable in most A-T patients. A subset of patients with notable protein levels (5-20%) has milder phenotypes (20). Pati...