Graphical Abstract:We investigated the changes of gut microbiome, host metabolism and their relationships of lincomycin exposure by microbiological and metabolomics profiling.
Abstract
16Humans are associated with a consortium of gut micobiome and individual variations in 17 the microbes influence host metabolism. To probe the relationship between microbiome and 18 the host metabolic changes, we analyzed the metabonomic and microbiological response of 19 rats exposed to lincomycin (LM) by an integrated approach combining 16S rRNA gene 20 sequencing and 1 H NMR-based metabolomics profiling. LM exposure resulted in decreased 21 levels of hippurate, short chain fatty acids (SCFAs) and primary bile acids and increased 22 levels of choline and oligosaccharides. Levels of Barnesiella and Prevotella decreased 23 sharply, whereas level of Clostridium cluster XIVa increased slightly. In addition, strong 24 correlations were observed between metabolites and the levels of Barnesiella, Prevotella and 25 Escherichia coli. Meanwhile, some metabolites, such as N-methylnicotinate and trigonelline, 26 showed association with osmotic homeostasis and nucleic acid synthesis. These results 27 suggest that LM exposure lead to significantly suppressed fermentation, gut microbial 28 modification of bile acids and influenced liver and kidney homeostasis. This applicable 29 method reveals the effects regarding metabonomic and microbiological responses of LM, and 30 the combination of microbiology and metabonomics as a powerful approach offers a non-31 invasive means to elucidate the progression of drugs and diet. The correlation between the 32 host and gut microbiota identifies potential biomarkers and provides substantial insight into 33