Spores of the anaerobic bacterium Clostridium novyi NT are able to germinate in and destroy hypoxic regions of tumors in experimental animals. Future progress in this area will benefit from a better understanding of the germination and outgrowth processes that are essential for the tumorilytic properties of these spores. Toward this end, we have used both transmission electron microscopy and atomic force microscopy to determine the structure of both dormant and germinating spores. We found that the spores are surrounded by an amorphous layer intertwined with honeycomb parasporal layers. Moreover, the spore coat layers had apparently selfassembled, and this assembly was likely to be governed by crystal growth principles. During germination and outgrowth, the honeycomb layers, as well as the underlying spore coat and undercoat layers, sequentially dissolved until the vegetative cell was released. In addition to their implications for understanding the biology of C. novyi NT, these studies document the presence of proteinaceous growth spirals in a biological organism.Clostridium novyi is a motile, spore-forming, gram-variable (gram positive in young cultures, often gram negative in older cultures) anaerobic bacterium. It can cause infections leading to gas gangrene in humans, particularly after traumatic wounds or illicit drug use, and can also infect domestic animals, particularly sheep (22). The pathology of C. novyi is attributed to the lethal alpha-toxin (6). To reduce systemic toxicity, an attenuated strain, called C. novyi NT and devoid of the alphatoxin, was generated. Intravenous injection of C. novyi NT spores into tumor-bearing mice was found to successfully eradicate large tumors, either in combination with radiation therapy (7) and chemotherapy (13) or by itself, since it can induce a potent immune response (1). When C. novyi NT spores are injected into mice, the spores exclusively germinate in tumors and spare other tissues, even in aged animals or those with ischemic myocardial lesions (16).C. novyi NT is therefore one of the most promising bacterial agents for cancer therapeutics that have been described in the past few years (55). Such therapeutic approaches were first attempted more than 50 years ago and have continued sporadically since that time. Many of these attempts used various strains of clostridia. Despite this long history and the importance of clostridia spores in other medical contexts, there have been relatively few studies of either the nature of the germination and outgrowth processes or the structure of the spore coat. Germination is a well-defined process of conversion of a dormant spore into a metabolically active form (46). The outgrowth stage starts with the initiation of spore metabolism. During the outgrowth stage, macromolecular synthesis in the spore converts the germinated spore into a growing cell (35,46). The spore coat endows bacterial spores with remarkable resistance to physical and chemical agents and allows them to persist in nature for centuries (11,17,57).Atomic for...