Split
reporters based on fluorescent proteins and luciferases have
emerged as valuable tools for measuring interactions in biological
systems. Relatedly, biosensors that transduce measured input signals
into outputs that influence the host system are key components of
engineered gene circuits for synthetic biology applications. While
small-molecule-based imaging agents are widely used in biological
studies, and small-molecule-based drugs and chemical probes can target
a range of biological processes, a general method for generating a
target small molecule in a biological system based on a measured input
signal is lacking. Here, we develop a proximity-dependent split esterase
that selectively unmasks ester-protected small molecules in an interaction-dependent
manner. Exploiting the versatility of an ester-protected small-molecule
output, we demonstrate fluorescent, chemiluminescent, and pharmacological
probe generation, each created by masking key alcohol functional groups
on a target small molecule. We show that the split esterase system
can be used in combination with ester-masked fluorescent or luminescent
probes to measure protein–protein interactions and protein–protein
interaction inhibitor engagement. We demonstrate that the esterase-based
reporter system is compatible with other commonly used split reporter
imaging systems for the simultaneous detection of multiple protein–protein
interactions. Finally, we develop a system for selective small-molecule-dependent
cell killing by unmasking a cytotoxic molecule using an inducible
split esterase. Presaging utility in future synthetic biology-based
therapeutic applications, we also show that the system can be used
for intercellular cell killing via a bystander effect, where one activated
cell unmasks a cytotoxic molecule and kills cells physically adjacent
to the activated cells. Collectively, this work illustrates that the
split esterase system is a valuable new addition to the split protein
toolbox, with particularly exciting potential in synthetic biology
applications.